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[176678_at]

Description F35B3.3 /REP_DB=WormBase Gene ID /WP=CE07170 /GB=AAK68374.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 35.3
(1.2)
A 		16.8
(-1.5)
A 		6.9
(-3)
A 		47.3
(3)
A 		40
B 48.6
(2.4)
A 		44
(1.9)
A 		5.2
(-3)
A 		53
(3)
A 		48
C 49.3
(-1.6)
A 		22.2
(-3)
A 		24.6
(-2.9)
A 		138.1
(3)
A 		116
avr 44.4
(-0.1) 		27.7
(-1.6) 		12.2
(-3) 		79.5
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 33.1
(1.3)
A 		4.4
(-3)
A 		44.4
(3)
A 		16.2
(-1.2)
A 		23.6
(-0.1)
A 		4.5
(-3)
A 		40
B 22.8
(-0.5)
A 		30.7
(0.6)
A 		35.8
(1.3)
A 		37.5
(1.5)
A 		48.4
(3)
A 		4.9
(-3)
A 		44
C 33.2
(-1)
A 		40.4
(-0.3)
A 		34.3
(-0.9)
A 		73.3
(3)
A 		34.4
(-0.9)
A 		13.8
(-3)
A 		60
avr 29.7
(0.8) 		25.2
(0) 		38.2
(2.3) 		42.3
(3) 		35.5
(1.8) 		7.7
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 12.8
(3)
A 		3.6
(-2)
A 		1.8
(-3)
A 		6.9
(-0.2)
A 		11
B 15.5
(3)
A 		10.9
(1.1)
A 		1.2
(-3)
A 		11.3
(1.2)
A 		14
C 16.3
(0.5)
A 		6.4
(-3)
A 		8.6
(-2.2)
A 		23.3
(3)
A 		17
avr 14.9
(3) 		7
(-1.3) 		3.9
(-3) 		13.8
(2.4) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 6.1
(0.5)
A 		1.6
(-2.7)
A 		9.7
(3)
A 		4.1
(-0.9)
A 		7.1
(1.2)
A 		1.1
(-3)
A 		9
B 7.9
(-1)
A 		10.2
(-0.2)
A 		8.7
(-0.7)
A 		9.9
(-0.3)
A 		19.7
(3)
A 		1.8
(-3)
A 		18
C 12.3
(1.6)
A 		12.3
(1.6)
A 		8.7
(-0.6)
A 		14.7
(3)
A 		11.1
(0.9)
A 		4.6
(-3)
A 		10
avr 8.8
(0.7) 		8
(0.3) 		9
(0.9) 		9.6
(1.2) 		12.6
(3) 		2.5
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176678_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17494
Sequence Type Exemplar sequence
Representative Public ID F35B3.3 NCBI
Target Description F35B3.3 /REP_DB=WormBase Gene ID /WP=CE07170 /GB=AAK68374.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078346(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078346 NCBI Caenorhabditis elegans F35B3.3 (F35B3.3) mRNA, complete cds. 11/11 None
SNAP00000019165 ENSEMBL cdna:SNAP chromosome:CEL140:X:17013375:17017727:1 11/11 None
GENEFINDER00000019172 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17013375:17017727:1 11/11 None
F35B3.3 ENSEMBL cdna:known chromosome:CEL140:X:17013375:17013941:1 gene:F35B3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17013374-17013941(+) 96.49 100.0
Public Domain and Genome References
Gene Title
Ensembl F35B3.3
Entrez Gene 185254 Entrez gene
SwissProt Q966K1 EMBL-EBI
WormBase CE07170 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68936 Hypothetical protein T12B5.6 [Caenorhabditis elegans] ref|NP_497296.1| T12B5.6 [Caenorhabditis elegans] 0.0
blast T32726 hypothetical protein C45H4.5 - Caenorhabditis elegans 0.0
blast T18779 transposase containing protein - Caenorhabditis elegans 0.0
blast AAK68374 Hypothetical protein F35B3.3 [Caenorhabditis elegans] ref|NP_510747.1| F35B3.3 [Caenorhabditis elegans] 2.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Sequence
Target Sequence 
>C. ELEGANS:176678_AT
gtctggattctacaccggatatctagagaaaaaacacaaatgtaactggaaatgctacct
tcctaacaacaattgcaaattgaggcaaataaaaccagttccgaatttgactcgtctctt
ggaggagtcgaggctcacgaattcattgagcaggctccgtgatgttttcaagaaaaagtc
gtctccgtgtgaaactgatgtgaacagcaatgctgagcacattggtggcgaatcaatttg
gggtaaaattcagcgtatgtcagtttccaattgccagaatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTGGATTCTACACCGGATATCTA 360 471 21 Antisense
AAATGCTACCTTCCTAACAACAATT 288 119 70 Antisense
ACCAGTTCCGAATTTGACTCGTCTC 630 83 114 Antisense
GAATTTGACTCGTCTCTTGGAGGAG 542 325 123 Antisense
GGAGGAGTCGAGGCTCACGAATTCA 532 487 141 Antisense
CACGAATTCATTGAGCAGGCTCCGT 293 199 156 Antisense
GCAGGCTCCGTGATGTTTTCAAGAA 190 311 170 Antisense
GTCGTCTCCGTGTGAAACTGATGTG 285 473 198 Antisense
AATGCTGAGCACATTGGTGGCGAAT 131 167 229 Antisense
AATTCAGCGTATGTCAGTTTCCAAT 605 175 267 Antisense
GTCAGTTTCCAATTGCCAGAATCGA 495 465 279 Antisense
Sequence Source Affymetrix Proprietary Database