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[176677_at]

Description D1014.6 /REP_DB=WormBase Gene ID /WP=CE07008 /GB=AAK68284.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 10.8
(-0.2)
A 		14
(3)
A 		8.1
(-2.9)
A 		8
(-3)
A 		6
B 3
(-3)
A 		11.8
(3)
A 		8.7
(0.9)
A 		4.5
(-2)
A 		9
C 6.9
(-2.9)
A 		11.4
(-2.4)
A 		5.5
(-3)
A 		64.5
(3)
A 		59
avr 6.9
(-3) 		12.4
(-1.2) 		7.4
(-2.8) 		25.7
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 15.5
(-1)
A 		6.7
(-2.7)
A 		5
(-3)
A 		6.2
(-2.8)
A 		36
(3)
A 		15.9
(-0.9)
A 		31
B 5.6
(-0.1)
A 		6.3
(0.8)
A 		4.7
(-1.4)
A 		7.9
(3)
A 		3.5
(-3)
A 		4.6
(-1.5)
A 		4
C 17.8
(-0.2)
A 		7.5
(-3)
A 		8.5
(-2.7)
A 		29.5
(3)
A 		7.5
(-3)
A 		11.4
(-1.9)
A 		22
avr 13
(1.3) 		6.8
(-2.6) 		6.1
(-3) 		14.5
(2.3) 		15.7
(3) 		10.6
(-0.2) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.9
(3)
A 		3
(1)
A 		2.1
(-1)
A 		1.2
(-3)
A 		3
B 1
(-3)
A 		2.9
(3)
A 		2
(0.2)
A 		1
(-3)
A 		2
C 2.3
(-2.7)
A 		3.3
(-2.1)
A 		1.9
(-3)
A 		10.9
(3)
A 		9
avr 2.4
(-2) 		3.1
(-0.3) 		2
(-3) 		4.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.9
(-1.9)
A 		2.4
(-2.2)
A 		1.1
(-3)
A 		1.6
(-2.7)
A 		10.9
(3)
A 		3.9
(-1.3)
A 		10
B 1.9
(1.8)
A 		2.1
(3)
A 		1.1
(-3)
A 		2.1
(3)
A 		1.4
(-1.2)
A 		1.7
(0.6)
A 		1
C 6.6
(3)
A 		2.3
(-2.9)
A 		2.2
(-3)
A 		5.9
(2)
A 		2.4
(-2.7)
A 		3.8
(-0.8)
A 		4
avr 3.8
(1.1) 		2.3
(-1.6) 		1.5
(-3) 		3.2
(0) 		4.9
(3) 		3.1
(-0.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176677_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11722
Sequence Type Exemplar sequence
Representative Public ID D1014.6 NCBI
Target Description D1014.6 /REP_DB=WormBase Gene ID /WP=CE07008 /GB=AAK68284.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072695(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072695 NCBI Caenorhabditis elegans D1014.6 (D1014.6) mRNA, complete cds. 11/11 None
SNAP00000031797 ENSEMBL cdna:SNAP chromosome:CEL140:V:8121898:8125941:1 11/11 None
GENEFINDER00000031807 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8120867:8129213:1 11/11 None
D1014.6 ENSEMBL cdna:known chromosome:CEL140:V:8123832:8125941:1 gene:D1014.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8123832-8125942(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1014.6
Entrez Gene 183897 Entrez gene
SwissProt Q95ZW7 EMBL-EBI
WormBase CE07008 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_505096 D1014.6 [Caenorhabditis elegans] gb|AAK68284.1| Hypothetical protein D1014.6 [Caenorhabditis elegans] 0.0
blast CAE66128 Hypothetical protein CBG11352 [Caenorhabditis briggsae] 0.0
blast CAE66124 Hypothetical protein CBG11348 [Caenorhabditis briggsae] 0.0
blast NP_505097 D1014.5 [Caenorhabditis elegans] gb|AAA96284.1| Hypothetical protein D1014.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.7E-87
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.1E-77
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000031807 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:176677_AT
agtggacagcagttattgacatcgatgagagaattgaaatgagatcagaatcatttaaaa
ctatcatcagcctcttagattcaattcgtgatccgaacattgtaaatcttcattttaaag
ttcaatgggtgataaagggctcggacactcctgctgaatatgtaaacgaaaaagagctga
tcgatgaaattatattccataaataccaaaatacttcacaaattggaggtttttggaatc
aacctaaatgtatcattcgaccggagaaaatcggaatgatgacaatccatgcaccaatga
cgacctactctgggttacgaagatctcttgtcaacgaaactattggggttgtaaggcact
atcgaaatgtagaacagcgagtatttgccggggcacttgaaagaatgatggtgcatgctc
catttaatatatatccaataccaaaatggattgatgaattactgactgacgcgattttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGGACAGCAGTTATTGACATCGA 336 59 914 Antisense
ATTTAAAACTATCATCAGCCTCTTA 71 13 966 Antisense
CAGCCTCTTAGATTCAATTCGTGAT 270 203 981 Antisense
GGGTGATAAAGGGCTCGGACACTCC 315 497 1040 Antisense
CTCGGACACTCCTGCTGAATATGTA 121 233 1053 Antisense
GACAATCCATGCACCAATGACGACC 113 365 1194 Antisense
ATGACGACCTACTCTGGGTTACGAA 201 1 1210 Antisense
GGGTTACGAAGATCTCTTGTCAACG 85 497 1225 Antisense
ATTGGGGTTGTAAGGCACTATCGAA 675 1 1255 Antisense
GAACAGCGAGTATTTGCCGGGGCAC 423 347 1285 Antisense
GAATTACTGACTGACGCGATTTTGA 507 323 1369 Antisense
Sequence Source Affymetrix Proprietary Database