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[176676_s_at]

Description T22F3.3 /REP_DB=WormBase Gene ID /WP=CE24003 /GB=AAK72092.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 52      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 35      6grp_total > 52      4grp_total > 60      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4258
1 2 3 4 range
A 4518.4
(3)
P 		4220.4
(2.5)
P 		4373.4
(2.8)
P 		778.6
(-3)
P 		3740
B 4290.5
(2.1)
P 		4919
(3)
P 		4491
(2.4)
P 		895.7
(-3)
P 		4023
C 4208
(2.9)
P 		4292.8
(3)
P 		4073.9
(2.6)
P 		660.8
(-3)
P 		3632
avr 4339
(2.8) 		4477.4
(3) 		4312.8
(2.7) 		778.4
(-3) 		3699

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3222
1 2 3 4 5 6 range
A 2611
(-3)
P 		3899.9
(2.1)
P 		4112.9
(3)
P 		3769
(1.6)
P 		3106.9
(-1)
P 		3583
(0.9)
P 		1502
B 2806.4
(-2.9)
P 		3196.3
(-1.4)
P 		4312.9
(3)
P 		3456
(-0.3)
P 		2815
(-2.8)
P 		2776.4
(-3)
P 		1537
C 3613.7
(0.5)
P 		2815.6
(-1)
P 		4979.5
(3)
P 		2905.2
(-0.9)
P 		4142.5
(1.4)
P 		1757.1
(-3)
P 		3222
avr 3010.4
(-2) 		3303.9
(-1) 		4468.4
(3) 		3376.7
(-0.7) 		3354.8
(-0.8) 		2705.5
(-3) 		1763
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1534
1 2 3 4 range
A 1645.1
(3)
P 		916.1
(0.1)
P 		1143.3
(1)
P 		114
(-3)
P 		1531
B 1368.2
(3)
P 		1214.9
(2.2)
P 		1040.7
(1.3)
P 		190.9
(-3)
P 		1177
C 1393
(2.9)
P 		1234.2
(2.1)
P 		1419.9
(3)
P 		111.4
(-3)
P 		1309
avr 1468.8
(3) 		1121.7
(1.4) 		1201.3
(1.8) 		138.8
(-3) 		1330

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 906
1 2 3 4 5 6 range
A 481.3
(-3)
P 		1387
(3)
P 		895.7
(-0.3)
P 		955.9
(0.1)
P 		937.5
(0)
P 		872.3
(-0.4)
P 		906
B 976.5
(-1.4)
P 		1063.9
(0.9)
P 		1047.3
(0.5)
P 		915.4
(-3)
P 		1143.7
(3)
P 		1035.3
(0.2)
P 		228
C 1339.4
(3)
P 		859.1
(-0.8)
P 		1267.4
(2.4)
P 		584.2
(-3)
P 		1340.5
(3)
P 		588.2
(-3)
P 		756
avr 932.4
(-0.9) 		1103.3
(2.3) 		1070.1
(1.7) 		818.5
(-3) 		1140.6
(3) 		831.9
(-2.8) 		322
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176676_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15785
Sequence Type Exemplar sequence
Representative Public ID T22F3.3 NCBI
Target Description T22F3.3 /REP_DB=WormBase Gene ID /WP=CE24003 /GB=AAK72092.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071606(11), NM_182317(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071606 NCBI Caenorhabditis elegans T22F3.3a (T22F3.3) mRNA, complete cds. 11/11 None
NM_182317 NCBI Caenorhabditis elegans T22F3.3b (T22F3.3) mRNA, complete cds. 11/11 None
SNAP00000034222 ENSEMBL cdna:SNAP chromosome:CEL140:V:3581277:3584614:1 11/11 None
GENEFINDER00000034239 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3578993:3584614:1 11/11 None
T22F3.3a ENSEMBL cdna:known chromosome:CEL140:V:3578872:3584859:1 gene:T22F3.3 11/11 None
T22F3.3b.2 ENSEMBL cdna:known chromosome:CEL140:V:3581221:3584614:1 gene:T22F3.3 11/11 None
T22F3.3b.1 ENSEMBL cdna:known chromosome:CEL140:V:3581223:3584614:1 gene:T22F3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3578992-3584614(+) 100.0 100.0
Public Domain and Genome References
Ensembl T22F3.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK72092 Hypothetical protein T22F3.3a [Caenorhabditis elegans] ref|NP_504007.1| T22F3.3a [Caenorhabditis elegans] 0.0
blast AAO25987 Hypothetical protein T22F3.3b [Caenorhabditis elegans] ref|NP_872117.1| T22F3.3b [Caenorhabditis elegans] 0.0
blast CAE58217 Hypothetical protein CBG01313 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000811 EMBL-EBI Glycosyl transferase, family 35 1.0E-126
Pfam IPR000811 EMBL-EBI Glycosyl transferase, family 35 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:176676_S_AT
gagaactaccgtgtctcgatggctgaaaagatcattccagcttctgatctctctgaacag
atctcgaccgccggaaccgaggcttcaggaaccggaaacatgaagttcatgttgaacgga
gctctcacaatcggaactctcgacggagccaacgttgagatggccgaggagatgggcgac
gagaacatcttcatcttcggaatgaacgtcgaggaggttgaggcgctcacaaagcgcgga
tactcttcgcaggagttcatcgacaagagcccaatgctcaagcagatcatcgagcaaatc
gaaggtggcatgttcactccagaagatccagatcagctcaaggatctctccaacatgctc
cgctatcatgatcgtttcatggtgtgcgccgatttcgacgctttcattgaagcccaggat
aaggtctccgctacattccgcgaccaagagaagtggtctcgcatggccctctacaacatc
gcctcgaccggaaagttctcaacagatcgcacaatcaccgaatacgctcgtgaaatctgg
ggaatcgaccagttcgagagctctcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAACTACCGTGTCTCGATGGCTG 159 391 2062 Antisense
GAGCTCTCACAATCGGAACTCTCGA 571 387 2180 Antisense
AACTCTCGACGGAGCCAACGTTGAG 384 137 2196 Antisense
GCGACGAGAACATCTTCATCTTCGG 128 289 2237 Antisense
CAAAGCGCGGATACTCTTCGCAGGA 535 191 2291 Antisense
AGCTCAAGGATCTCTCCAACATGCT 4 81 2396 Antisense
TGCTCCGCTATCATGATCGTTTCAT 211 581 2417 Antisense
TTTCATGGTGTGCGCCGATTTCGAC 213 673 2436 Antisense
CAGGATAAGGTCTCCGCTACATTCC 501 207 2476 Antisense
GCCTCGACCGGAAAGTTCTCAACAG 627 281 2542 Antisense
ATCGACCAGTTCGAGAGCTCTCTTC 683 35 2605 Antisense
Sequence Source Affymetrix Proprietary Database