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[176674_at] 7TM chemoreceptor, srxa family

Description C09E7.1 /REP_DB=WormBase Gene ID /WP=CE25766 /GB=AAK68171.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 11      6grp_cgc > 92      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 24.2
(-3)
A 		42.3
(-2.3)
A 		25.5
(-2.9)
A 		174.5
(3)
P 		150
B 23.7
(-3)
A 		32
(-1.9)
A 		31.2
(-2)
A 		67.1
(3)
A 		43
C 56.4
(-0.7)
A 		34.9
(-2)
A 		17.1
(-3)
A 		119
(3)
P 		102
avr 34.8
(-2.4) 		36.4
(-2.3) 		24.6
(-3) 		120.2
(3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 47.6
(1.4)
A 		1.4
(-3)
A 		64.9
(3)
A 		36.1
(0.3)
A 		39
(0.6)
A 		5.2
(-2.6)
A 		64
B 6.9
(-2.7)
A 		45
(3)
A 		42.5
(2.6)
A 		5.1
(-3)
A 		23.6
(-0.2)
A 		33.6
(1.3)
A 		40
C 20.6
(-1.8)
A 		51.9
(1.1)
A 		33.2
(-0.6)
A 		73.1
(3)
M 		7.2
(-3)
A 		29.5
(-1)
A 		66
avr 25
(-2.5) 		32.8
(-0.5) 		46.9
(3) 		38.1
(0.8) 		23.3
(-2.9) 		22.8
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 8.8
(-2.3)
A 		9.2
(-2.2)
A 		6.7
(-3)
A 		25.5
(3)
P 		19
B 7.6
(-2.7)
A 		7.9
(-2.4)
A 		7.2
(-3)
A 		14.3
(3)
A 		7
C 18.7
(2.4)
A 		10
(-1.3)
A 		6
(-3)
A 		20.1
(3)
P 		14
avr 11.7
(-0.7) 		9
(-1.9) 		6.6
(-3) 		20
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8.8
(0.7)
A 		0.5
(-3)
A 		14.1
(3)
A 		9.1
(0.8)
A 		11.8
(2)
A 		1.3
(-2.6)
A 		14
B 2.4
(-2.5)
A 		15
(3)
A 		10.3
(0.9)
A 		1.3
(-3)
A 		9.6
(0.6)
A 		12.5
(1.9)
A 		14
C 7.6
(-0.7)
A 		15.9
(3)
A 		8.5
(-0.3)
A 		14.7
(2.5)
M 		2.3
(-3)
A 		9.9
(0.4)
A 		14
avr 6.3
(-3) 		10.5
(2.4) 		11
(3) 		8.4
(-0.3) 		7.9
(-1) 		7.9
(-1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176674_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7891
Sequence Type Exemplar sequence
Representative Public ID C09E7.1 NCBI
Target Description C09E7.1 /REP_DB=WormBase Gene ID /WP=CE25766 /GB=AAK68171.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066040(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066040 NCBI Caenorhabditis elegans Serpentine Receptor, class XA family member (srxa-5) (srxa-5) mRNA, complete cds. 11/11 None
GENEFINDER00000042852 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6532645:6533645:1 10/11 None
C09E7.1 ENSEMBL cdna:known chromosome:CEL140:III:6532495:6533703:1 gene:C09E7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6532493-6533702(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srxa family
Gene Symbol srxa-5
Ensembl C09E7.1
Entrez Gene 182448 Entrez gene
SwissProt Q95YE4 EMBL-EBI
WormBase CE25766 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68171 Serpentine receptor, class xa protein 5 [Caenorhabditis elegans] ref|NP_498441.1| Serpentine Receptor, class XA family member (srxa-5) [Caenorhabditis elegans] 1.0E-176
blast AAK68171 Serpentine receptor, class xa protein 5 [Caenorhabditis elegans] ref|NP_498441.1| Serpentine Receptor, class XA family member (srxa-5) [Caenorhabditis elegans] 1.0E-118
blast NP_504902 Serpentine Receptor, class XA family member (srxa-4) [Caenorhabditis elegans] gb|AAK18933.2| Serpentine receptor, class xa protein 4 [Caenorhabditis elegans] 8.0E-60
blast CAE70414 Hypothetical protein CBG16985 [Caenorhabditis briggsae] 3.0E-55
blast NP_504902 Serpentine Receptor, class XA family member (srxa-4) [Caenorhabditis elegans] gb|AAK18933.2| Serpentine receptor, class xa protein 4 [Caenorhabditis elegans] 2.0E-42
blast CAA93501 Hypothetical protein F56D5.10 [Caenorhabditis elegans] ref|NP_501663.1| Serpentine Receptor, class XA family member (srxa-2) [Caenorhabditis elegans] 3.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 2.9E-50
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 4.6E-58
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498441.1 5 6-28,41-63,94-116,129-151,181-203
C09E7.1 5 6-28,41-63,94-116,129-151,181-203
GENEFINDER00000042852 4 7-29,44-66,79-101,131-153
Sequence
Target Sequence 
>C. ELEGANS:176674_AT
gatgactgcacatcgagttctcattctggtatttccagcaaagaatcatataatattttc
agagaagaaggtcatgatatactgcctggtgattacgatatgtgttttcatttccctgat
tattccttacatgtcatattgcccccttaatttcgactctagaaccaacatctttgtagc
tgcctgtgatccaaaccgtcatccgataaccacgtttcaaaaccaatcaactgtattttt
tccggccattgctatgattgttaacatgagtattattttatggatgaagctattcaaaaa
gtcaactggagcaacttcttcaaaatgggaaaagacgatcattcgacaagcgatttctac
agcaatttacttgtctatttatgaaattggttatcagtgtataaggcaatttccagtaga
gtacgcgcgacttccactagaagcccgtactataattctacagtttcgtttttgtattgt
gtgttctatcaattttcttgtatattttgtagaggcacgatcaaccagagagcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGACTGCACATCGAGTTCTCATT 383 411 327 Antisense
TCGAGTTCTCATTCTGGTATTTCCA 295 603 339 Antisense
TCATTTCCCTGATTATTCCTTACAT 396 619 434 Antisense
ATTCCTTACATGTCATATTGCCCCC 657 5 448 Antisense
GAACCAACATCTTTGTAGCTGCCTG 553 343 488 Antisense
CAAACCGTCATCCGATAACCACGTT 508 189 518 Antisense
ATCAACTGTATTTTTTCCGGCCATT 347 27 552 Antisense
GTCAACTGGAGCAACTTCTTCAAAA 193 465 627 Antisense
TTTCCAGTAGAGTACGCGCGACTTC 143 667 736 Antisense
CGACTTCCACTAGAAGCCCGTACTA 634 249 754 Antisense
GAGGCACGATCAACCAGAGAGCTTC 523 405 838 Antisense
Sequence Source Affymetrix Proprietary Database