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[176673_at]

Description C18B2.1 /REP_DB=WormBase Gene ID /WP=CE04040 /GB=AAK39172.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 44      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 71
(-1.7)
P 		104.6
(3)
A 		61.6
(-3)
A 		84.9
(0.3)
P 		43
B 71.7
(1.6)
P 		83.4
(3)
A 		31.9
(-3)
A 		79.9
(2.6)
A 		52
C 85.5
(3)
P 		85.4
(3)
A 		73.1
(2)
A 		13.3
(-3)
A 		72
avr 76.1
(0.5) 		91.1
(3) 		55.5
(-3) 		59.4
(-2.3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 41.4
(0.6)
A 		59.6
(3)
A 		14
(-3)
A 		52.1
(2)
A 		40.1
(0.4)
A 		28.8
(-1.1)
A 		46
B 69.9
(3)
A 		43.4
(0.6)
A 		52.7
(1.4)
A 		8.3
(-2.6)
A 		7.8
(-2.6)
A 		3.8
(-3)
A 		66
C 83
(3)
P 		56
(0.9)
A 		55.2
(0.8)
A 		62.7
(1.4)
A 		6.6
(-3)
A 		20.4
(-1.9)
A 		76
avr 64.8
(3) 		53
(1.5) 		40.6
(-0.1) 		41
(-0) 		18.2
(-2.9) 		17.7
(-3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 25.9
(3)
P 		22.7
(1.6)
A 		16.1
(-1.4)
A 		12.4
(-3)
P 		14
B 22.9
(3)
P 		20.6
(2.1)
A 		7.4
(-3)
A 		17
(0.7)
A 		16
C 28.3
(3)
P 		24.6
(2.1)
A 		25.5
(2.4)
A 		2.2
(-3)
A 		26
avr 25.7
(3) 		22.6
(1.8) 		16.3
(-0.7) 		10.5
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 7.6
(-1.5)
A 		21.2
(3)
A 		3.1
(-3)
A 		13.2
(0.3)
A 		12.1
(-0)
A 		7
(-1.7)
A 		18
B 24.3
(3)
A 		14.4
(0.4)
A 		12.8
(-0)
A 		2.2
(-2.8)
A 		3.2
(-2.5)
A 		1.4
(-3)
A 		23
C 30.8
(3)
P 		17.1
(0.1)
A 		14
(-0.5)
A 		12.6
(-0.8)
A 		2.1
(-3)
A 		6.8
(-2)
A 		29
avr 20.9
(3) 		17.6
(1.7) 		10
(-1.1) 		9.3
(-1.4) 		5.8
(-2.7) 		5.1
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176673_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18303
Sequence Type Exemplar sequence
Representative Public ID C18B2.1 NCBI
Target Description C18B2.1 /REP_DB=WormBase Gene ID /WP=CE04040 /GB=AAK39172.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076223(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076223 NCBI Caenorhabditis elegans C18B2.1 (C18B2.1) mRNA, complete cds. 11/11 None
SNAP00000016053 ENSEMBL cdna:SNAP chromosome:CEL140:X:3628303:3630998:1 11/11 None
GENEFINDER00000016056 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3628303:3630998:1 11/11 None
C18B2.1 ENSEMBL cdna:known chromosome:CEL140:X:3628303:3630871:1 gene:C18B2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3628303-3630872(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18B2.1
Entrez Gene 182765 Entrez gene
SwissProt Q18079 EMBL-EBI
WormBase CE04040 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39172 Hypothetical protein C18B2.1 [Caenorhabditis elegans] ref|NP_508624.1| C18B2.1 [Caenorhabditis elegans] sp|Q18079|YXT1_CAEEL Hypothetical protein C18B2.1 in chromosome X 1.0E-176
blast AAK39172 Hypothetical protein C18B2.1 [Caenorhabditis elegans] ref|NP_508624.1| C18B2.1 [Caenorhabditis elegans] sp|Q18079|YXT1_CAEEL Hypothetical protein C18B2.1 in chromosome X 1.0E-175
blast CAE68456 Hypothetical protein CBG14246 [Caenorhabditis briggsae] 1.0E-148
blast CAE68456 Hypothetical protein CBG14246 [Caenorhabditis briggsae] 1.0E-131
blast CAD92405 Hypothetical protein Y87G2A.16 [Caenorhabditis elegans] ref|NP_001021832.1| Y87G2A.16 [Caenorhabditis elegans] 5.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 3.2E-121
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 7.3E-120
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508624.1 1 9-31
C18B2.1 1 9-31
SNAP00000016053 1 9-31
GENEFINDER00000016056 1 9-31
Sequence
Target Sequence 
>C. ELEGANS:176673_AT
gacgggggccatgtgctatttatacgatgagaaagcttatgctgactccgggagaacttt
tgatgacgaattcagtactaggttttgtaaaaataagaatgagttttcaagtgtaaacgc
tgtacgcgatgcttataatatttcatttgtcaaaacggattggctattttccatgataac
aagagaccctattgacagatttgtgtcaggatatgtagatagatgtgtcagaatatcgca
gaaaaacgaaactggtcagtgtaacgggtgcggattaaatatgacatgttttattgaaaa
tgagtacaaaaggctgatggaaatctcgttcaaacgaaaaacccatcgaactatggagga
tgcccacttttttccacagatctggcattgtgatctcaatgaagatttggaatttttcga
gtttattcaatattccaataatccagaaaccacaatgatgccacaactagaagaaatgct
gaaacggcaaaaagtaccaagtgactcgatcagatttattaaaaatgaattactatataa
aaagtcgagtcattctaccacagggacaccagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGGGGCCATGTGCTATTTATAC 210 377 375 Antisense
GAGAAAGCTTATGCTGACTCCGGGA 250 391 403 Antisense
GACTCCGGGAGAACTTTTGATGACG 590 373 418 Antisense
GTGTAAACGCTGTACGCGATGCTTA 424 479 485 Antisense
AAGAGACCCTATTGACAGATTTGTG 511 153 555 Antisense
AACTGGTCAGTGTAACGGGTGCGGA 467 135 624 Antisense
GAACTATGGAGGATGCCCACTTTTT 150 349 722 Antisense
CCCACTTTTTTCCACAGATCTGGCA 252 259 737 Antisense
TCCAGAAACCACAATGATGCCACAA 160 591 816 Antisense
AAAAGTCGAGTCATTCTACCACAGG 450 131 914 Antisense
TCATTCTACCACAGGGACACCAGCA 138 619 924 Antisense
Sequence Source Affymetrix Proprietary Database