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[176672_at]

Description W08G11.1 /REP_DB=WormBase Gene ID /WP=CE16558 /GB=CAB07296.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 33      6grp_total > 10      4grp_total > 49      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 21.2
(-3)
A 		215.1
(3)
P 		152.2
(1.1)
P 		50
(-2.1)
A 		194
B 57.4
(-3)
A 		177.4
(2.7)
P 		183.4
(3)
P 		64.8
(-2.6)
P 		126
C 36
(-3)
A 		172.6
(1.7)
P 		209
(3)
P 		97.3
(-0.9)
P 		173
avr 38.2
(-3) 		188.4
(3) 		181.5
(2.7) 		70.7
(-1.7) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 66.4
(-1.8)
P 		111.7
(3)
P 		103.1
(2.1)
P 		61
(-2.3)
P 		75.4
(-0.8)
P 		54.5
(-3)
P 		57
B 35.1
(-3)
P 		146.7
(3)
P 		76.9
(-0.8)
P 		49.2
(-2.2)
P 		103.2
(0.7)
P 		58.5
(-1.7)
P 		112
C 24.2
(-3)
A 		160.7
(3)
P 		64.4
(-1.2)
P 		101.7
(0.4)
P 		49.2
(-1.9)
A 		54.7
(-1.7)
A 		137
avr 41.9
(-3) 		139.7
(3) 		81.5
(-0.6) 		70.6
(-1.2) 		75.9
(-0.9) 		55.9
(-2.1) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 7.7
(-2.9)
A 		46.7
(3)
P 		39.8
(1.9)
P 		7.3
(-3)
A 		39
B 18.3
(-2.1)
A 		43.8
(3)
P 		42.5
(2.7)
P 		13.8
(-3)
P 		30
C 11.9
(-3)
A 		49.6
(0.7)
P 		72.9
(3)
P 		16.4
(-2.6)
P 		61
avr 12.6
(-3) 		46.7
(2.2) 		51.7
(3) 		12.5
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 12.2
(-3)
P 		39.7
(3)
P 		22.5
(-0.8)
P 		15.5
(-2.3)
P 		22.7
(-0.7)
P 		13.3
(-2.8)
P 		28
B 12.2
(-3)
P 		48.8
(3)
P 		18.7
(-1.9)
P 		13
(-2.9)
P 		41.9
(1.9)
P 		21.8
(-1.4)
P 		37
C 9
(-3)
A 		49
(3)
P 		16.4
(-1.9)
P 		20.5
(-1.3)
P 		15.9
(-2)
A 		18.3
(-1.6)
A 		40
avr 11.1
(-3) 		45.8
(3) 		19.2
(-1.6) 		16.3
(-2.1) 		26.8
(-0.3) 		17.8
(-1.8) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176672_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13148
Sequence Type Exemplar sequence
Representative Public ID W08G11.1 NCBI
Target Description W08G11.1 /REP_DB=WormBase Gene ID /WP=CE16558 /GB=CAB07296.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074731(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074731 NCBI Caenorhabditis elegans W08G11.1 (W08G11.1) mRNA, complete cds. 11/11 None
SNAP00000011324 ENSEMBL cdna:SNAP chromosome:CEL140:V:16349667:16352416:1 11/11 None
GENEFINDER00000011329 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16349667:16353848:1 9/11 None
W08G11.1 ENSEMBL cdna:known chromosome:CEL140:V:16349962:16352416:1 gene:W08G11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16349961-16352416(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W08G11.1
Entrez Gene 180099 Entrez gene
SwissProt Q7YTW2 EMBL-EBI
WormBase CE16558 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07296 Hypothetical protein W08G11.1 [Caenorhabditis elegans] ref|NP_507132.1| W08G11.1 [Caenorhabditis elegans] pir||T26291 hypothetical protein W08G11.1 - Caenorhabditis elegans 0.0
blast CAB07296 Hypothetical protein W08G11.1 [Caenorhabditis elegans] ref|NP_507132.1| W08G11.1 [Caenorhabditis elegans] pir||T26291 hypothetical protein W08G11.1 - Caenorhabditis elegans 1.0E-171
blast CAE71909 Hypothetical protein CBG18971 [Caenorhabditis briggsae] 1.0E-125
blast CAB04491 Hypothetical protein F56H6.2 [Caenorhabditis elegans] ref|NP_493103.1| F56H6.2 [Caenorhabditis elegans] 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 1.0E-126
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 1.0E-126
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 7.8E-107
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000011324 1 12-31
GENEFINDER00000011329 1 12-31
Sequence
Target Sequence 
>C. ELEGANS:176672_AT
tcaactcgcgtaccctggagagtcagtctctatgtaccatgccatgaaaggtcaccgctt
ggatgggctcagtggttttgtggtgggaagtatgcaaccttgggtggaggttatggcact
gaaaaatggagctagaaaaattctgacagtggaatataacaaactggaaattcaggaaga
gtttcaagacagactctcctcgattctgccggtggagtttgcaaaaaattggcaagagta
cgctggaaaactcgactttgcagcttctttttcatcaatcgaacattctggattgggaag
atatggcgacccgattgatccgattggtgacttgagagaaatgcttaaaattaaatgcat
gctgaaacaaggaggtctcctattcctcggcttgccactcggaaccgacgcgatccagta
taacgctcatcggatatacggttcgattcgtctcgcgatgatgttctacgggtttgagtg
gttggacacgtattctggggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACTCGCGTACCCTGGAGAGTCA 378 631 522 Antisense
AGAGTCAGTCTCTATGTACCATGCC 353 69 540 Antisense
CCATGCCATGAAAGGTCACCGCTTG 114 271 558 Antisense
TCACCGCTTGGATGGGCTCAGTGGT 478 625 573 Antisense
TTTCAAGACAGACTCTCCTCGATTC 190 671 703 Antisense
TCGACTTTGCAGCTTCTTTTTCATC 274 601 773 Antisense
AAGATATGGCGACCCGATTGATCCG 562 155 819 Antisense
GACGCGATCCAGTATAACGCTCATC 339 381 928 Antisense
ATATACGGTTCGATTCGTCTCGCGA 303 13 955 Antisense
GTCTCGCGATGATGTTCTACGGGTT 580 469 971 Antisense
GTGGTTGGACACGTATTCTGGGGAC 659 489 999 Antisense
Sequence Source Affymetrix Proprietary Database