[Home] | [Total List]

[176670_at]

Description F44E2.4 /REP_DB=WormBase Gene ID /WP=CE28232 /GB=AAK67236.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 82      6grp_total > 85      4grp_total > 16      6grp_highest_sub > In      6grp_high1_sub > In      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 118.8
(-3)
P 		194.2
(-0.1)
P 		159.1
(-1.5)
P 		274.8
(3)
P 		156
B 149.6
(-3)
P 		174.8
(3)
P 		172.6
(2.5)
P 		170.7
(2)
P 		25
C 171
(-3)
P 		196.8
(-1.6)
P 		213.5
(-0.8)
P 		284.4
(3)
P 		113
avr 146.5
(-3) 		188.6
(-0.4) 		181.7
(-0.8) 		243.3
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 333
1 2 3 4 5 6 range
A 294.7
(-0.7)
P 		186
(-3)
P 		366.8
(0.8)
P 		396.7
(1.4)
P 		435
(2.2)
P 		471.7
(3)
P 		286
B 200.5
(-3)
P 		212.2
(-2.7)
P 		382.9
(1)
P 		424
(2)
P 		420.1
(1.9)
P 		470.8
(3)
P 		270
C 187.1
(-3)
P 		236.1
(-2.1)
P 		385.4
(0.6)
P 		453
(1.8)
P 		416.1
(1.1)
P 		519.4
(3)
P 		332
avr 227.4
(-2.7) 		211.4
(-3) 		378.4
(0.6) 		424.6
(1.6) 		423.7
(1.6) 		487.3
(3) 		276
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 43.3
(3)
P 		42.1
(0.7)
P 		41.6
(-0.3)
P 		40.2
(-3)
P 		3
B 47.7
(3)
P 		43.2
(0.6)
P 		40
(-1.1)
P 		36.4
(-3)
P 		11
C 56.6
(-1)
P 		56.6
(-1)
P 		74.4
(3)
P 		48
(-3)
P 		26
avr 49.2
(1.4) 		47.3
(0.3) 		52
(3) 		41.5
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 54.3
(-3)
P 		66.1
(-2.1)
P 		79.9
(-1)
P 		100.6
(0.6)
P 		131.3
(3)
P 		114.8
(1.7)
P 		77
B 69.8
(-3)
P 		70.6
(-3)
P 		93
(-1.7)
P 		112.3
(-0.6)
P 		170.7
(2.7)
P 		175.5
(3)
P 		106
C 69.3
(-3)
P 		72
(-2.8)
P 		98.1
(-1.3)
P 		91.1
(-1.7)
P 		134.6
(0.7)
P 		173.9
(3)
P 		105
avr 64.5
(-3) 		69.6
(-2.7) 		90.3
(-1.3) 		101.3
(-0.6) 		145.5
(2.4) 		154.7
(3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176670_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7624
Sequence Type Exemplar sequence
Representative Public ID F44E2.4 NCBI
Target Description F44E2.4 /REP_DB=WormBase Gene ID /WP=CE28232 /GB=AAK67236.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066550(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066550 NCBI Caenorhabditis elegans F44E2.10 (F44E2.10) mRNA, complete cds. 11/11 None
SNAP00000039999 ENSEMBL cdna:SNAP chromosome:CEL140:III:8829593:8830963:-1 11/11 None
GENEFINDER00000040008 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8829593:8830963:-1 11/11 None
F44E2.10 ENSEMBL cdna:known chromosome:CEL140:III:8829593:8831011:-1 gene:F44E2.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8829588-8838273(-) 98.67 100.0
Public Domain and Genome References
Gene Title
Ensembl F44E2.10
Entrez Gene 185734 Entrez gene
SwissProt Q95QG1 EMBL-EBI
WormBase CE26893 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1602798_AT similar to Protein KIAA0152 precursor cfa
CANINE_2:CFA.13253.1.A1_AT similar to Protein KIAA0152 precursor cfa
CANINE_2:CFAAFFX.16276.1.S1_AT similar to Protein KIAA0152 precursor cfa
DROSOPHILA_2:1624665_AT dm
DROSGENOME1:146571_AT dm
CHICKEN:GGAAFFX.4444.1.S1_AT similar to Hypothetical protein KIAA0152 gga
CHICKEN:GGAAFFX.4444.2.S1_S_AT similar to Hypothetical protein KIAA0152 gga
HG-U95AV2:41728_AT KIAA0152 hs
HG-U133_PLUS_2:200616_S_AT KIAA0152 hs
HG-U133A:200616_S_AT KIAA0152 hs
HG-U133A_2:200616_S_AT KIAA0152 hs
HG-U133_PLUS_2:200617_AT KIAA0152 hs
HG-U133A:200617_AT KIAA0152 hs
HG-U133A_2:200617_AT KIAA0152 hs
HU35KSUBC:RC_AA252282_S_AT KIAA0152 hs
HU35KSUBC:RC_AA053027_AT KIAA0152 hs
HUGENEFL:D63486_AT KIAA0152 hs
U133_X3P:G7661947_3P_AT KIAA0152 hs
U133_X3P:G12653206_3P_A_AT KIAA0152 hs
HG-U95B:51430_AT KIAA0152 hs
MG-U74BV2:106483_AT RIKEN cDNA 2410014A08 gene mm
MG-U74BV2:105584_AT RIKEN cDNA 2410014A08 gene mm
MG-U74BV2:107921_AT RIKEN cDNA 2410014A08 gene mm
MOE430B:1436508_AT RIKEN cDNA 2410014A08 gene mm
MOUSE430_2:1436508_AT RIKEN cDNA 2410014A08 gene mm
MOE430B:1436509_AT RIKEN cDNA 2410014A08 gene mm
MOUSE430_2:1436509_AT RIKEN cDNA 2410014A08 gene mm
MOE430B:1458652_AT RIKEN cDNA 2410014A08 gene, mRNA (cDNA clone MGC:25948 IMAGE:4237864) mm
MOUSE430_2:1458652_AT RIKEN cDNA 2410014A08 gene, mRNA (cDNA clone MGC:25948 IMAGE:4237864) mm
MG-U74CV2:167145_AT RIKEN cDNA 2410014A08 gene, mRNA (cDNA clone MGC:25948 IMAGE:4237864) mm
MU19KSUBA:TC23908_AT RIKEN cDNA 2410014A08 gene, mRNA (cDNA clone MGC:25948 IMAGE:4237864) mm
MU19KSUBB:TC31952_AT RIKEN cDNA 2410014A08 gene, mRNA (cDNA clone MGC:25948 IMAGE:4237864) mm
MU19KSUBC:TC35743_AT RIKEN cDNA 2410014A08 gene, mRNA (cDNA clone MGC:25948 IMAGE:4237864) mm
RG-U34B:RC_AI070294_AT similar to Hypothetical protein KIAA0152 (predicted) rn
RAE230A:1375697_AT similar to Hypothetical protein KIAA0152 (predicted) rn
RAT230_2:1375697_AT similar to Hypothetical protein KIAA0152 (predicted) rn
RAE230B:1379046_AT similar to Hypothetical protein KIAA0152 (predicted) rn
RAT230_2:1379046_AT similar to Hypothetical protein KIAA0152 (predicted) rn
RAE230B:1378784_AT Similar to Hypothetical protein KIAA0152 (predicted) rn
RAT230_2:1378784_AT Similar to Hypothetical protein KIAA0152 (predicted) rn
RAE230A:1388541_AT Similar to Hypothetical protein KIAA0152 (predicted) rn
RAT230_2:1388541_AT Similar to Hypothetical protein KIAA0152 (predicted) rn
RG-U34C:RC_AI178850_AT Similar to Hypothetical protein KIAA0152 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK67235 Hypothetical protein F44E2.10 [Caenorhabditis elegans] ref|NP_498951.1| F44E2.10 [Caenorhabditis elegans] 1.0E-153
blast AAK67235 Hypothetical protein F44E2.10 [Caenorhabditis elegans] ref|NP_498951.1| F44E2.10 [Caenorhabditis elegans] 1.0E-145
blast CAE62741 Hypothetical protein CBG06904 [Caenorhabditis briggsae] 6.0E-88
blast CAE62741 Hypothetical protein CBG06904 [Caenorhabditis briggsae] 7.0E-88
blast XP_415264 PREDICTED: similar to Hypothetical protein KIAA0152 [Gallus gallus] 2.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498951.1 2 10-32,274-296
F44E2.10 2 10-32,274-296
SNAP00000039999 1 260-278
GENEFINDER00000040008 1 260-278
Sequence
Target Sequence 
>C. ELEGANS:176670_AT
atggcgagtacgtcatcattctgaaattctcggaagtctactttcaaaaagctggagaaa
aaattttcaatataagaatcaattcacatctggctgtcaaaaatctagacatttttgatg
cagctggcggtcgaggatttgcccatgatgtctatattccagtggttatcaagggtagct
ctatttcggtgtctggacattcaagagaatacaaaggaaaagtcatcattgagctctcaa
aaggtccccatgataatccgaaactcaatggatacgctattcttcgtggaactgttgaag
atctgccatcaccgccagaaaaattcattgttgaagatcatttcccggaggattttgaca
tttatgaagacgatgcaactgaagatagtttcaaacctcaaatcatcagaggagatgagc
ctgacgaagaagaaatgtacagtgcaccatcggcggcgggaacggagaatccatttgaaa
aggaaaccatgaacatctggcttccgcttgtcgccattcttatcgtcgttattcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCGAGTACGTCATCATTCTGAA 582 53 4259 Antisense
GAATCAATTCACATCTGGCTGTCAA 553 327 4334 Antisense
TTGATGCAGCTGGCGGTCGAGGATT 516 705 4373 Antisense
GTCGAGGATTTGCCCATGATGTCTA 35 475 4388 Antisense
TAGCTCTATTTCGGTGTCTGGACAT 73 653 4434 Antisense
AGGTCCCCATGATAATCCGAAACTC 66 57 4500 Antisense
GATACGCTATTCTTCGTGGAACTGT 173 425 4529 Antisense
AACTGTTGAAGATCTGCCATCACCG 399 143 4548 Antisense
ACCATCGGCGGCGGGAACGGAGAAT 512 81 4704 Antisense
GAAACCATGAACATCTGGCTTCCGC 479 359 4741 Antisense
TCGCCATTCTTATCGTCGTTATTCC 491 599 4769 Antisense
Sequence Source Affymetrix Proprietary Database