[Home] | [Total List]

[176669_at]

Description Y66A7A.8 /REP_DB=WormBase Gene ID /WP=CE15692 /GB=CAC35862.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 36      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.2
(-3)
A 		8.3
(1.4)
A 		8.1
(1.1)
A 		9.4
(3)
A 		4
B 10.1
(1.1)
A 		13.2
(3)
A 		3.2
(-3)
A 		3.2
(-3)
A 		10
C 10.5
(1)
A 		13.1
(2.6)
A 		3.9
(-3)
A 		13.8
(3)
A 		10
avr 8.6
(0.3) 		11.5
(3) 		5.1
(-3) 		8.8
(0.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 4.2
(-2.9)
A 		5.8
(-2.8)
A 		7.6
(-2.6)
A 		3.6
(-3)
A 		3.7
(-3)
A 		57.4
(3)
A 		54
B 2.9
(-3)
A 		8.9
(-2.1)
A 		14.1
(-1.2)
A 		5.8
(-2.5)
A 		7.5
(-2.3)
A 		40.8
(3)
A 		38
C 8.4
(-2.8)
A 		6.1
(-2.9)
A 		8.1
(-2.8)
A 		6.3
(-2.9)
A 		4.6
(-3)
A 		140.8
(3)
A 		136
avr 5.2
(-3) 		6.9
(-2.9) 		9.9
(-2.6) 		5.2
(-3) 		5.3
(-3) 		79.7
(3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.9
(1.3)
A 		1.8
(0.4)
A 		2.1
(3)
A 		1.4
(-3)
A 		1
B 3.2
(2.8)
A 		3.3
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		3
C 3.5
(2.3)
A 		3.8
(3)
A 		1.4
(-3)
A 		2.3
(-0.8)
A 		2
avr 2.9
(2.6) 		3
(3) 		1.4
(-3) 		1.5
(-2.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 0.8
(-3)
A 		2.1
(-2.4)
A 		1.7
(-2.6)
A 		0.9
(-3)
A 		1.1
(-2.9)
A 		14
(3)
A 		13
B 1
(-3)
A 		2.9
(-2.2)
A 		3.4
(-2)
A 		1.5
(-2.8)
A 		3.1
(-2.1)
A 		15.2
(3)
A 		14
C 3.1
(-2.8)
A 		1.9
(-2.9)
A 		2.1
(-2.9)
A 		1.3
(-3)
A 		1.5
(-3)
A 		47.1
(3)
A 		46
avr 1.6
(-2.9) 		2.3
(-2.7) 		2.4
(-2.7) 		1.2
(-3) 		1.9
(-2.8) 		25.4
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176669_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6937
Sequence Type Exemplar sequence
Representative Public ID Y66A7A.8 NCBI
Target Description Y66A7A.8 /REP_DB=WormBase Gene ID /WP=CE15692 /GB=CAC35862.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067105(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067105 NCBI Caenorhabditis elegans T BoX family member (tbx-33) (tbx-33) mRNA, complete cds. 10/11 None
SNAP00000036270 ENSEMBL cdna:SNAP chromosome:CEL140:III:11633282:11636716:-1 9/11 None
GENEFINDER00000036274 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11633282:11636716:-1 10/11 None
Y66A7A.8 ENSEMBL cdna:known chromosome:CEL140:III:11633282:11638424:-1 gene:Y66A7A.8 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11633276-11638419(-) 91.93 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tbx-33
Ensembl Y66A7A.8
Entrez Gene 190493 Entrez gene
SwissProt O45291 EMBL-EBI
WormBase CE15692 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC35862 Hypothetical protein Y66A7A.8 [Caenorhabditis elegans] emb|CAA21552.1| Hypothetical protein Y66A7A.8 [Caenorhabditis elegans] ref|NP_499506.1| T BoX family member (tbx-33) [Caenorhabditis elegans] sp|O45291|TBX33_CAEEL Putative T-box protein 33 emb|CAA21503.1| Y66A7A.8 [Caenorhabditis elegans] 0.0
blast AAB52929 T box family protein 18 [Caenorhabditis elegans] ref|NP_494611.1| T BoX family member (tbx-18) [Caenorhabditis elegans] sp|O02073|TBX18_CAEEL Putative T-box protein 5.0E-17
blast CAE64331 Hypothetical protein CBG09014 [Caenorhabditis briggsae] 4.0E-14
blast AAB52929 T box family protein 18 [Caenorhabditis elegans] ref|NP_494611.1| T BoX family member (tbx-18) [Caenorhabditis elegans] sp|O02073|TBX18_CAEEL Putative T-box protein 3.0E-9
Sequence
Target Sequence 
>C. ELEGANS:176669_AT
taagcctaaacctatacctaatcctaaacctaagcgtcgaggtatcaaatgagtgcaagt
acatcccggtactcatcatcaacgagattctaccaaatcaagagcttcgattggttgggg
aatttgagaacgagattacccaatttgcgacagtttcttcatacaaggaccacatcgtaa
aagccttgcgcacagccgccaacccaacttctcgcggagacgccaaacaggaagccgttc
aggtcggaaagcaatggagatcatccaacaagtccttgctggaatccctcagaccatcta
tgatttgcaccagtgtctccacaactgctccaagcaccaatttccatgctccactgcagt
accccggcacctcatccccatccagcaactttgctccaatgacaccttccacgtcattcg
actcggcgtacagttccttcaacgtgacgtcatcaactccagaacaaatgtgctacaatc
cgattccttcaatgtcaactgactactcattttgctcattcgactctgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGCCTAAACCTATACCTAATCCT 83 639 919 Antisense
CATCCCGGTACTCATCATCAACGAG 570 209 980 Antisense
TACCCAATTTGCGACAGTTTCTTCA 599 647 1055 Antisense
GGACCACATCGTAAAAGCCTTGCGC 75 523 1085 Antisense
CAACAAGTCCTTGCTGGAATCCCTC 186 181 1184 Antisense
GGAATCCCTCAGACCATCTATGATT 451 533 1199 Antisense
TATGATTTGCACCAGTGTCTCCACA 267 655 1217 Antisense
ACAACTGCTCCAAGCACCAATTTCC 366 113 1239 Antisense
CAGCAACTTTGCTCCAATGACACCT 385 203 1301 Antisense
AATGTGCTACAATCCGATTCCTTCA 9 165 1385 Antisense
TCATTTTGCTCATTCGACTCTGCGA 625 619 1425 Antisense
Sequence Source Affymetrix Proprietary Database