[Home] | [Total List]

[176668_at]

Description C32B5.1 /REP_DB=WormBase Gene ID /WP=CE25802 /GB=AAK71358.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 47      4grp_high_8_8 > 26      6grp_total > 47      4grp_total > 38      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 181.6
(3)
P 		100
(-1.1)
P 		61
(-3)
P 		100.2
(-1)
M 		121
B 154.4
(3)
P 		105
(-0.7)
P 		96.7
(-1.3)
P 		73.5
(-3)
P 		81
C 155.2
(3)
P 		102.3
(-0.1)
P 		52.9
(-3)
P 		131.8
(1.6)
P 		102
avr 163.7
(3) 		102.4
(-0.9) 		70.2
(-3) 		101.8
(-1) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 234.7
(3)
P 		100.2
(-1.9)
P 		131.5
(-0.7)
P 		69.4
(-3)
P 		79.9
(-2.6)
A 		152.6
(0)
P 		165
B 183.1
(2.1)
P 		140.2
(0.1)
P 		146.6
(0.4)
P 		114
(-1.2)
P 		74.5
(-3)
P 		203.4
(3)
P 		129
C 161.3
(0.1)
P 		133
(-0.9)
P 		95.6
(-2.3)
P 		101.3
(-2)
A 		74.5
(-3)
P 		243.6
(3)
P 		169
avr 193
(2.7) 		124.5
(-0.7) 		124.6
(-0.7) 		94.9
(-2.1) 		76.3
(-3) 		199.9
(3) 		124
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 66.1
(3)
P 		21.7
(-2.2)
P 		16
(-2.8)
P 		14.7
(-3)
M 		51
B 49.2
(3)
P 		25.9
(-1.2)
P 		22.4
(-1.8)
P 		15.7
(-3)
P 		34
C 51.4
(3)
P 		29.4
(-1)
P 		18.4
(-3)
P 		22.2
(-2.3)
P 		33
avr 55.6
(3) 		25.7
(-1.7) 		18.9
(-2.8) 		17.5
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 43.3
(3)
P 		35.6
(1.2)
P 		28.6
(-0.4)
P 		17.6
(-3)
P 		24.1
(-1.5)
A 		37.1
(1.6)
P 		26
B 63.7
(1.4)
P 		46.7
(-0.8)
P 		35.6
(-2.3)
P 		30.2
(-3)
P 		30.3
(-3)
P 		75.9
(3)
P 		46
C 59.8
(0.9)
P 		40.6
(-1)
P 		24.3
(-2.6)
P 		20.4
(-3)
A 		24.1
(-2.6)
P 		81.5
(3)
P 		61
avr 55.6
(1.7) 		41
(-0.4) 		29.5
(-2) 		22.7
(-3) 		26.2
(-2.5) 		64.8
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176668_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5057
Sequence Type Exemplar sequence
Representative Public ID C32B5.1 NCBI
Target Description C32B5.1 /REP_DB=WormBase Gene ID /WP=CE25802 /GB=AAK71358.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061474(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061474 NCBI Caenorhabditis elegans C32B5.1a (C32B5.1) mRNA, complete cds. 11/11 A 
C32B5.1a ENSEMBL cdna:known chromosome:CEL140:II:986024:988616:1 gene:C32B5.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182207 8/11 Cross Hyb Matching Probes None
SNAP00000019550 3/11 Cross Hyb Matching Probes None
GENEFINDER00000019573 2/11 Cross Hyb Matching Probes None
C32B5.1b 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173477 2 1 NM_061474 176668_at (11), 182983_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:986022-988615(+) 99.78 100.0
Public Domain and Genome References
Ensembl C32B5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493875 C32B5.1a [Caenorhabditis elegans] gb|AAK71358.1| Hypothetical protein C32B5.1a [Caenorhabditis elegans] 0.0
blast NP_872007 C32B5.1b [Caenorhabditis elegans] gb|AAN63439.1| Hypothetical protein C32B5.1b [Caenorhabditis elegans] 1.0E-162
blast AAB71028 Hypothetical protein K02E7.7 [Caenorhabditis elegans] ref|NP_493900.1| K02E7.7 [Caenorhabditis elegans] 4.0E-64
Sequence
Target Sequence 
>C. ELEGANS:176668_AT
gctggaacttgatgactatactgggagaacacaattgctgagctcaatagctctatacct
tgatccatcaaacttcccattaaagtgtctcagacttccaaagtttttgatggggtggga
aaaagacggtatgctaaaccatcaagttatccagacagcaaaattgctgacaattaacgg
gttcccccaatatattcacaaaatttcaactcgaatagttagagttcacctagacctcat
aaagtcaaattgggatattagcttcatatccgaaaagctgattaaattgatcgatcactg
gttggacattggcaaggaagttgggactaggttctcatttgtttggagcgctacaaggat
gaatgcagcacgtgatatctggaaggccatacgggataaatttattttccgaattagaga
aactcaaagaacggatgattgtttcgagccgctcaaaattccatcacgcttctattcaga
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGGAACTTGATGACTATACTGGG 191 293 798 Antisense
ATAGCTCTATACCTTGATCCATCAA 132 23 844 Antisense
AAGTGTCTCAGACTTCCAAAGTTTT 357 159 880 Antisense
GGTTCCCCCAATATATTCACAAAAT 247 507 977 Antisense
GTTAGAGTTCACCTAGACCTCATAA 95 447 1015 Antisense
GATCGATCACTGGTTGGACATTGGC 460 417 1086 Antisense
GGGACTAGGTTCTCATTTGTTTGGA 400 495 1120 Antisense
AGCACGTGATATCTGGAAGGCCATA 421 77 1164 Antisense
AACGGATGATTGTTTCGAGCCGCTC 624 143 1227 Antisense
TTTCGAGCCGCTCAAAATTCCATCA 250 669 1239 Antisense
AATTCCATCACGCTTCTATTCAGAA 150 179 1254 Antisense
Sequence Source Affymetrix Proprietary Database