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[176666_at]

Description Y66A7A.4 /REP_DB=WormBase Gene ID /WP=CE20343 /GB=CAC35858.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 07      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 38.4
(1.6)
A 		7.2
(-3)
A 		17.6
(-1.5)
A 		48.2
(3)
A 		41
B 57.8
(3)
A 		13.7
(-2.2)
A 		7.1
(-3)
A 		45.7
(1.6)
A 		51
C 4.3
(-3)
A 		6.7
(-2.7)
A 		49.2
(3)
A 		10.1
(-2.2)
A 		45
avr 33.5
(2.7) 		9.2
(-3) 		24.6
(0.6) 		34.7
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 10.1
(-3)
A 		38.8
(0.9)
A 		10.5
(-2.9)
A 		15.2
(-2.3)
A 		54
(3)
A 		16.4
(-2.1)
A 		44
B 7.9
(-2.9)
A 		7
(-3)
A 		10.5
(-2.7)
A 		21.2
(-1.8)
A 		76.1
(3)
A 		46
(0.4)
A 		69
C 65.9
(0.6)
A 		104.3
(3)
A 		9.1
(-3)
A 		28.9
(-1.8)
A 		10
(-2.9)
A 		65.9
(0.6)
A 		95
avr 28
(-0.3) 		50
(3) 		10
(-3) 		21.8
(-1.2) 		46.7
(2.5) 		42.8
(1.9) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 14
(3)
A 		1.6
(-3)
A 		4.6
(-1.5)
A 		7.1
(-0.3)
A 		12
B 18.4
(3)
A 		3.4
(-2.4)
A 		1.7
(-3)
A 		9.7
(-0.1)
A 		17
C 1.4
(-3)
A 		1.9
(-2.8)
A 		17.1
(3)
A 		1.7
(-2.9)
A 		16
avr 11.3
(3) 		2.3
(-3) 		7.8
(0.7) 		6.2
(-0.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 1.9
(-3)
A 		13.8
(2)
A 		2.3
(-2.8)
A 		3.8
(-2.2)
A 		16.3
(3)
A 		4
(-2.1)
A 		14
B 2.8
(-2.9)
A 		2.3
(-3)
A 		2.5
(-3)
A 		5.6
(-2.3)
A 		30.9
(3)
A 		17.2
(0.1)
A 		29
C 24.4
(1.5)
A 		31.8
(3)
A 		2.3
(-3)
A 		5.8
(-2.3)
A 		3.2
(-2.8)
A 		22
(1)
A 		30
avr 9.7
(0) 		16
(2.7) 		2.4
(-3) 		5.1
(-1.9) 		16.8
(3) 		14.4
(2) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176666_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6529
Sequence Type Exemplar sequence
Representative Public ID Y66A7A.4 NCBI
Target Description Y66A7A.4 /REP_DB=WormBase Gene ID /WP=CE20343 /GB=CAC35858.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067101(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067101 NCBI Caenorhabditis elegans Y66A7A.4 (Y66A7A.4) mRNA, complete cds. 11/11 None
SNAP00000036268 ENSEMBL cdna:SNAP chromosome:CEL140:III:11612483:11623767:1 11/11 None
GENEFINDER00000036273 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11612483:11615583:1 11/11 None
Y66A7A.4 ENSEMBL cdna:known chromosome:CEL140:III:11612483:11615583:1 gene:Y66A7A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11612478-11615579(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y66A7A.4
Entrez Gene 190491 Entrez gene
SwissProt Q9U1V6 EMBL-EBI
WormBase CE20343 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35858 Hypothetical protein Y66A7A.4 [Caenorhabditis elegans] ref|NP_499502.1| Y66A7A.4 [Caenorhabditis elegans] emb|CAB63400.1| Y66A7A.4 [Caenorhabditis elegans] 0.0
blast CAC35859 Hypothetical protein Y66A7A.5 [Caenorhabditis elegans] ref|NP_499503.2| Y66A7A.5 [Caenorhabditis elegans] 0.0
blast CAA21499 Y66A7A.5 [Caenorhabditis elegans] 0.0
blast CAE67687 Hypothetical protein CBG13254 [Caenorhabditis briggsae] 1.0E-141
blast AAA50646 Hypothetical protein R01H2.4 [Caenorhabditis elegans] 1.0E-48
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 0.0299999993294477
Sequence
Target Sequence 
>C. ELEGANS:176666_AT
ggacctctgcttcatcataatttacgacttttcgcgaaacctgtgcacatatgatgatct
ccgcctgcatgtcaacgactaccgtccattcgcgccgtgcatcgttcgaagatgcatgaa
acgggccggcgaagaggcgccgtcaaccaagaaaaatatctacttcccgtattggaatga
aacggagttctatccgaataagtataccgaatcacttcagaaagttgtgaaaatggagga
cacgtttacgaaaggcggattcgacgatttggcttgttccagcgctcaaccgtcggcggg
agtcggtgacatttacaaaatggggcatttgcagaatttcgccacgatgagcttcttcaa
tgtggccagctcgaaaaagccctccgccgacggaaaaggcgcgaaaaactcgatcaacga
aataatcgaacgccacgtggacaatgaagttgtgccgcacccgtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACCTCTGCTTCATCATAATTTAC 607 523 846 Antisense
TACGACTTTTCGCGAAACCTGTGCA 225 649 868 Antisense
TGCACATATGATGATCTCCGCCTGC 639 577 889 Antisense
GAAGATGCATGAAACGGGCCGGCGA 456 335 953 Antisense
TTCGACGATTTGGCTTGTTCCAGCG 45 697 1105 Antisense
TCAACCGTCGGCGGGAGTCGGTGAC 64 629 1131 Antisense
GCATTTGCAGAATTTCGCCACGATG 257 309 1170 Antisense
GATGAGCTTCTTCAATGTGGCCAGC 364 411 1191 Antisense
TGTGGCCAGCTCGAAAAAGCCCTCC 402 555 1206 Antisense
GCCCTCCGCCGACGGAAAAGGCGCG 133 255 1224 Antisense
AATGAAGTTGTGCCGCACCCGTTTT 444 163 1288 Antisense
Sequence Source Affymetrix Proprietary Database