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[176665_s_at]

Description Y71H2AM.Q_rc /REP_DB=WormBase Gene ID /WP=CE26271 /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster 6grp_total > 29      4grp_total > 16      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 5.5
(-3)
A 		6.6
(-2.2)
A 		14.1
(3)
A 		11.9
(1.5)
A 		9
B 1.7
(-3)
A 		7.2
(3)
A 		6.5
(2.2)
A 		4.2
(-0.3)
A 		6
C 3.1
(-3)
A 		5
(-2.7)
A 		6.8
(-2.4)
A 		39.9
(3)
A 		37
avr 3.4
(-3) 		6.3
(-1.9) 		9.1
(-0.8) 		18.7
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 20.2
(3)
A 		5.2
(-2.1)
A 		4.1
(-2.5)
A 		6
(-1.8)
A 		2.6
(-3)
A 		9.7
(-0.6)
A 		18
B 9.1
(3)
A 		3.8
(-1.1)
A 		2.1
(-2.4)
A 		3.5
(-1.3)
A 		1.3
(-3)
A 		1.6
(-2.8)
A 		8
C 5.5
(-1.8)
A 		3.6
(-2.4)
A 		5.3
(-1.8)
A 		1.7
(-3)
A 		20.4
(3)
A 		4.3
(-2.2)
A 		19
avr 11.6
(3) 		4.2
(-2.6) 		3.8
(-2.9) 		3.7
(-3) 		8.1
(0.3) 		5.2
(-1.9) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2
(-1.4)
A 		1.4
(-3)
A 		3.7
(3)
A 		1.7
(-2.2)
A 		2
B 0.5
(-3)
A 		1.8
(3)
A 		1.5
(1.6)
A 		0.9
(-1.2)
A 		1
C 1
(-3)
A 		1.4
(-2.6)
A 		2.4
(-1.5)
A 		6.7
(3)
A 		6
avr 1.2
(-3) 		1.5
(-2.1) 		2.5
(1.1) 		3.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 3.7
(3)
A 		1.8
(-0.9)
A 		0.9
(-2.8)
A 		1.5
(-1.6)
A 		0.8
(-3)
A 		2.4
(0.3)
A 		3
B 3.2
(3)
A 		1.3
(-1.2)
A 		0.5
(-3)
A 		0.9
(-2.1)
A 		0.5
(-3)
A 		0.6
(-2.8)
A 		3
C 2
(-1.4)
A 		1.1
(-2.2)
A 		1.3
(-2)
A 		0.3
(-3)
A 		6.6
(3)
A 		1.5
(-1.9)
A 		6
avr 3
(3) 		1.4
(-1.6) 		0.9
(-3) 		0.9
(-3) 		2.6
(1.9) 		1.5
(-1.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176665_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28184
Sequence Type Exemplar sequence
Representative Public ID Y71H2AM.Q NCBI
Target Description Y71H2AM.Q_rc /REP_DB=WormBase Gene ID /WP=CE26271 /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065214(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065214 NCBI Caenorhabditis elegans Y71H2AM.19 (Y71H2AM.19) mRNA, complete cds. 11/11 None
SNAP00000014447 ENSEMBL cdna:SNAP chromosome:CEL140:III:2770841:2785934:-1 11/11 None
GENEFINDER00000014465 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2770841:2775202:-1 11/11 None
Y71H2AM.18 ENSEMBL cdna:known chromosome:CEL140:III:2770841:2774232:-1 gene:Y71H2AM.18 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2770827-2771846(-) 31.88 86.89
Public Domain and Genome References
Gene Title
Ensembl Y71H2AM.18
Entrez Gene 190611 Entrez gene
SwissProt Q4W5R4 EMBL-EBI
WormBase CE38657 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251529_AT DEAD box RNA helicase, putative at
CANINE:1599826_S_AT similar to DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform) cfa
CANINE:1597499_AT similar to DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform) cfa
CANINE:1593258_S_AT similar to DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform) cfa
CANINE:1585231_S_AT similar to DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform) cfa
CANINE:1585230_AT similar to DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform) cfa
CANINE_2:CFA.19989.1.S1_S_AT similar to DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform) cfa
CANINE_2:CFA.7069.1.A1_AT similar to DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform) cfa
CANINE_2:CFA.8896.1.S1_AT similar to DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform) cfa
CANINE_2:CFAAFFX.22006.1.S1_AT similar to DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform) cfa
CANINE_2:CFAAFFX.22006.1.S1_S_AT similar to DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform) cfa
DROSOPHILA_2:1640256_AT belle dm
DROSGENOME1:149514_AT belle dm
CHICKEN:GGA.12607.1.S1_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked gga
HG-U133_PLUS_2:201210_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-U133A:201210_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-FOCUS:201210_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-U133A_2:201210_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-U133_PLUS_2:207617_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-U133A_2:207617_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-U133A:207617_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-U95AV2:826_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HC-G110:826_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-U133A:201211_S_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-U133_PLUS_2:201211_S_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-U133A_2:201211_S_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HUGENEFL:U50553_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
U133_X3P:G3523149_3P_A_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
U133_X3P:G13514816_3P_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
U133_X3P:G13514812_3P_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
U133_X3P:HS.147916.2.A2_3P_A_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
U133_X3P:HS.147916.2.A1_3P_X_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
U133_X3P:HS.147916.2.A1_3P_S_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
U133_X3P:HS.147916.2.A1_3P_A_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
U133_X3P:212514_3P_X_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-U133A_2:212514_X_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-U133_PLUS_2:212514_X_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-U133A:212514_X_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-U133A_2:212515_S_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-U133_PLUS_2:212515_S_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-U133A:212515_S_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-U95AV2:39744_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-U95E:87502_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
U133_X3P:HS2.404294.1.S1_3P_X_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
U133_X3P:HS2.404294.1.S1_3P_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-U133_PLUS_2:1558120_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-U95D:86082_F_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
HG-U95D:86084_F_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked hs
MOE430A:1423042_AT DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked mm
MOUSE430A_2:1423042_AT DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked mm
MOUSE430_2:1423042_AT DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked mm
MOE430A:1423043_S_AT DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked mm
MOUSE430A_2:1423043_S_AT DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked mm
MOUSE430_2:1423043_S_AT DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked mm
MU11KSUBA:L25126_S_AT DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked mm
MU11KSUBA:U42386_S_AT DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked mm
MG-U74AV2:93309_AT DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked mm
MG-U74AV2:101542_F_AT DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked mm
MOE430A:1416467_AT DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked mm
MOUSE430A_2:1416467_AT DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked mm
MOUSE430_2:1416467_AT DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked mm
MG-U74AV2:161273_F_AT DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked (Ddx3x), mRNA mm
MU11KSUBB:MSA.30756.0_S_AT DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked (Ddx3x), mRNA mm
MU11KSUBB:MSA.36811.0_S_AT DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked (Ddx3x), mRNA mm
RG-U34A:RC_AA892042_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked rn
RAE230A:1372242_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked rn
RAT230_2:1372242_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked rn
RAE230B:1386535_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked rn
RAT230_2:1386535_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked rn
RAE230B:1385214_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked rn
RAT230_2:1385214_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked rn
RG-U34C:RC_AI230369_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked rn
YEAST_2:1769674_AT Putative ATP-dependent RNA helicase of the DEAD-box protein family; mutants show reduced stability of the 40S ribosomal subunit scanning through 5' untranslated regions of mRNAs Sc
Protein Similarities
Method ID Description E-Value
blast AAY43989 Hypothetical protein Y71H2AM.19 [Caenorhabditis elegans] ref|NP_497615.2| Y71H2AM.19 [Caenorhabditis elegans] 0.0
blast CAE64981 Hypothetical protein CBG09816 [Caenorhabditis briggsae] 0.0
blast AAK29984 Hypothetical protein Y71H2AM.20a [Caenorhabditis elegans] ref|NP_497617.1| Y71H2AM.20a [Caenorhabditis elegans] 0.0
blast CAE60548 Hypothetical protein CBG04175 [Caenorhabditis briggsae] 1.0E-167
blast AAY43989 Hypothetical protein Y71H2AM.19 [Caenorhabditis elegans] ref|NP_497615.2| Y71H2AM.19 [Caenorhabditis elegans] 1.0E-138
blast CAE64981 Hypothetical protein CBG09816 [Caenorhabditis briggsae] 1.0E-132
blast AAY43989 Hypothetical protein Y71H2AM.19 [Caenorhabditis elegans] ref|NP_497615.2| Y71H2AM.19 [Caenorhabditis elegans] 1.0E-115
blast CAE64981 Hypothetical protein CBG09816 [Caenorhabditis briggsae] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR004327 EMBL-EBI Phosphotyrosyl phosphatase activator, PTPA 1.0E-126
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 1.1E-36
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 9.3E-81
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 1.1E-6
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 4.0E-23
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 3.6E-44
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 1.1E-36
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 9.3E-81
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 1.0E-25
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 1.1E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000014465 1 300-322
Sequence
Target Sequence 
>C. ELEGANS:176665_S_AT
aggtcgcgatcaccgttatcaaggtggaagtggaaacggcggaggcggcaacggaggcgg
cggtggcttcggaggcggtggacaacgttccggtggaggcggtggattccagtcaggcgg
tggtggaggtcgccaacagcaacaacagcaacgtgctcagcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGTCGCGATCACCGTTATCAAGGT 416 57 365 Antisense
GCGATCACCGTTATCAAGGTGGAAG 481 289 370 Antisense
GGTGGAAGTGGAAACGGCGGAGGCG 618 497 387 Antisense
GAAGTGGAAACGGCGGAGGCGGCAA 251 335 391 Antisense
TCGGAGGCGGTGGACAACGTTCCGG 350 605 433 Antisense
GGACAACGTTCCGGTGGAGGCGGTG 635 525 444 Antisense
GTTCCGGTGGAGGCGGTGGATTCCA 154 441 451 Antisense
TGGAGGCGGTGGATTCCAGTCAGGC 286 549 458 Antisense
TGGATTCCAGTCAGGCGGTGGTGGA 380 551 467 Antisense
GATTCCAGTCAGGCGGTGGTGGAGG 549 431 469 Antisense
CAACAACAGCAACGTGCTCAGCCTC 407 189 504 Antisense
Sequence Source Affymetrix Proprietary Database