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[176664_at]

Description Y82E9BL.I_rc /REP_DB=WormBase Gene ID /WP=CE23394 /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster 6grp_high1_10_10 > 23      4grp_high_8_8 > 26      6grp_total > 12      4grp_total > 22      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 69.3
(2.4)
A 		37.9
(-3)
A 		44.8
(-1.8)
A 		73
(3)
A 		35
B 104.2
(3)
P 		82.5
(-1)
P 		72
(-3)
P 		93.3
(1)
A 		32
C 84.7
(3)
M 		66.5
(-0.3)
A 		51.1
(-3)
P 		83.3
(2.8)
P 		34
avr 86.1
(3) 		62.3
(-1.7) 		56
(-3) 		83.2
(2.4) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 80.2
(3)
P 		42.6
(-1.7)
A 		61.5
(0.7)
P 		38.4
(-2.2)
A 		77.8
(2.7)
M 		31.9
(-3)
A 		48
B 90.6
(1.8)
P 		100.8
(3)
P 		96.4
(2.5)
P 		91.3
(1.9)
P 		48.8
(-3)
A 		52.6
(-2.6)
P 		52
C 30.3
(-3)
A 		81.3
(3)
P 		53.5
(-0.3)
P 		66.1
(1.2)
A 		67
(1.3)
P 		47.3
(-1)
A 		51
avr 67
(1.5) 		74.9
(3) 		70.5
(2.1) 		65.3
(1.1) 		64.5
(1) 		43.9
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 25.2
(3)
A 		8.2
(-3)
A 		11.7
(-1.8)
A 		10.7
(-2.1)
A 		17
B 33.2
(3)
P 		20.4
(-1.7)
P 		16.7
(-3)
P 		19.9
(-1.8)
A 		17
C 28
(3)
M 		19.1
(-0.8)
A 		17.8
(-1.4)
P 		14
(-3)
P 		14
avr 28.8
(3) 		15.9
(-2.6) 		15.4
(-2.8) 		14.9
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 14.8
(-0.3)
P 		15.2
(-0.2)
A 		13.4
(-0.9)
P 		9.7
(-2.3)
A 		23.5
(3)
M 		7.8
(-3)
A 		16
B 31.5
(2.1)
P 		33.5
(3)
P 		23.4
(-1.4)
P 		24.2
(-1)
P 		19.8
(-2.9)
A 		19.6
(-3)
P 		14
C 11.2
(-3)
A 		24.8
(3)
P 		13.6
(-1.9)
P 		13.3
(-2.1)
A 		21.7
(1.6)
P 		15.8
(-1)
A 		14
avr 19.2
(-0.1) 		24.5
(3) 		16.8
(-1.6) 		15.7
(-2.2) 		21.7
(1.3) 		14.4
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176664_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28188
Sequence Type Exemplar sequence
Representative Public ID Y82E9BL.I NCBI
Target Description Y82E9BL.I_rc /REP_DB=WormBase Gene ID /WP=CE23394 /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y82E9BL.I
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y82E9BL.I Y82E9BL.I_rc /REP_DB=WormBase Gene ID /WP=CE23394 /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064982 11/11 Negative Strand Matching Probes A 
SNAP00000041767 9/11 Negative Strand Matching Probes None
GENEFINDER00000041782 11/11 Negative Strand Matching Probes None
Y82E9BL.11 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1319005-1321651(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176664_AT
tgcacttttccattgatccatatatattattttttcgaattgactaatattgtcagaaat
cgataaatgaattacagccagcatgtccgcattgaaatatgggagtatagagagagcatc
attgaatgatgtatcacgcagccagatttccttaacgaatatcgattttttgactttcaa
gacgtttttgagagcattgataatgtccaatttatcttctatatgtacagaaaagctaaa
ctttgacaaggaattgttcaatagtatctccaaatcgttaaatactattttcaggcaact
ttctcttttgataatcttttccttctcattataattcagtacagtactaccatctattgc
actgtaatatttggtttgaaatttgtccaattccagttcaaccttgtgatttttcgaaaa
tgtcaacgagattttgtcaaagttgaatccgatattatcaacggctgttctcaggttgcg
gcaaactttacggcaggtcaatcgatccataggctccaacttttccaaaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCACTTTTCCATTGATCCATATAT 564 577 346 Antisense
ATGAATTACAGCCAGCATGTCCGCA 692 43 412 Antisense
TATCACGCAGCCAGATTTCCTTAAC 630 657 477 Antisense
ACTATTTTCAGGCAACTTTCTCTTT 493 101 629 Antisense
ATCTTTTCCTTCTCATTATAATTCA 623 31 659 Antisense
GTACAGTACTACCATCTATTGCACT 276 461 684 Antisense
GTCCAATTCCAGTTCAACCTTGTGA 157 477 730 Antisense
ATCAACGGCTGTTCTCAGGTTGCGG 20 27 802 Antisense
GTTGCGGCAAACTTTACGGCAGGTC 253 435 820 Antisense
GGCAGGTCAATCGATCCATAGGCTC 350 535 837 Antisense
CATAGGCTCCAACTTTTCCAAAACT 93 213 853 Antisense
Sequence Source Affymetrix Proprietary Database