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[176662_at]

Description Y71H2AM.H_rc /REP_DB=WormBase Gene ID /WP=CE22950 /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster 6grp_total > 12      4grp_total > 43      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 48.9
(-3)
A 		64.8
(3)
A 		49.8
(-2.7)
P 		57.1
(0.1)
P 		16
B 47.5
(-1.4)
A 		100.6
(3)
P 		48.7
(-1.3)
A 		28.7
(-3)
A 		72
C 52.2
(-0.4)
A 		79.6
(3)
P 		30.9
(-3)
A 		35.2
(-2.5)
A 		49
avr 49.5
(-1.7) 		81.7
(3) 		43.1
(-2.6) 		40.3
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 28
(-1.4)
A 		68.5
(3)
P 		45.3
(0.5)
A 		51
(1.1)
A 		30.7
(-1.1)
A 		13
(-3)
A 		56
B 51.3
(2.2)
A 		52
(2.3)
P 		20.6
(-3)
A 		56
(3)
P 		47
(1.5)
P 		39.5
(0.2)
A 		35
C 59.5
(1.3)
P 		79.4
(3)
P 		71.4
(2.3)
P 		53.7
(0.8)
P 		29.9
(-1.2)
A 		9.3
(-3)
A 		70
avr 46.3
(0.4) 		66.6
(3) 		45.8
(0.3) 		53.6
(1.3) 		35.9
(-1) 		20.6
(-3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 17.8
(3)
A 		14.1
(0.6)
A 		13
(-0.1)
P 		8.4
(-3)
P 		9
B 15.1
(-0.1)
A 		24.8
(3)
P 		11.3
(-1.3)
A 		6.1
(-3)
A 		19
C 17.3
(1)
A 		22.9
(3)
P 		10.8
(-1.3)
A 		5.9
(-3)
A 		17
avr 16.7
(1.3) 		20.6
(3) 		11.7
(-0.9) 		6.8
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 5.2
(-2.4)
A 		24.3
(3)
P 		9.9
(-1.1)
A 		12.9
(-0.2)
A 		9.3
(-1.3)
A 		3.2
(-3)
A 		21
B 17.9
(2.5)
A 		17.3
(2.2)
P 		5
(-3)
A 		14.8
(1.2)
P 		19.1
(3)
P 		14.7
(1.1)
A 		14
C 22.1
(2.4)
P 		24.2
(3)
P 		18.2
(1.3)
P 		10.8
(-0.8)
P 		9.7
(-1.1)
A 		3.1
(-3)
A 		21
avr 15.1
(0.3) 		21.9
(3) 		11
(-1.4) 		12.8
(-0.7) 		12.7
(-0.7) 		7
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176662_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28182
Sequence Type Exemplar sequence
Representative Public ID Y71H2AM.H NCBI
Target Description Y71H2AM.H_rc /REP_DB=WormBase Gene ID /WP=CE22950 /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y71H2AM.H
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y71H2AM.H Y71H2AM.H_rc /REP_DB=WormBase Gene ID /WP=CE22950 /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065210 11/11 Negative Strand Matching Probes A 
SNAP00000014443 11/11 Negative Strand Matching Probes None
GENEFINDER00000014459 11/11 Negative Strand Matching Probes None
Y71H2AM.15 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2754845-2756350(+) 68.27 100.0
Sequence
Target Sequence 
>C. ELEGANS:176662_AT
aaattgccaatccacttgtctagtcgcttcattttcggcggcttgttattttgggatggg
tggccgtgaagagtcgctggaggtgtcgctgatcttcctcgtgtcgtgagtgggtgtcgt
ggttgtcgaaggtccactgaggctggacgctggaatcgcggatcgccatggaactcacgg
gaatcctgtgagcatgatcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTGCCAATCCACTTGTCTAGTC 645 115 143 Antisense
TCTAGTCGCTTCATTTTCGGCGGCT 425 613 161 Antisense
TTCGGCGGCTTGTTATTTTGGGATG 402 691 176 Antisense
GGATGGGTGGCCGTGAAGAGTCGCT 200 515 196 Antisense
AAGAGTCGCTGGAGGTGTCGCTGAT 42 155 211 Antisense
ATCTTCCTCGTGTCGTGAGTGGGTG 391 29 234 Antisense
GGGTGTCGTGGTTGTCGAAGGTCCA 574 331 254 Antisense
GAAGGTCCACTGAGGCTGGACGCTG 225 335 270 Antisense
TGGACGCTGGAATCGCGGATCGCCA 124 547 286 Antisense
GGATCGCCATGGAACTCACGGGAAT 683 511 302 Antisense
ACGGGAATCCTGTGAGCATGATCGG 93 95 319 Antisense
Sequence Source Affymetrix Proprietary Database