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[176661_at]

Description Y38F2AR.J_rc /REP_DB=WormBase Gene ID /WP=CE26517 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster 6grp_total > 50      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 3.5
(-2.9)
A 		4.6
(-2.8)
A 		2.3
(-3)
A 		88.6
(3)
A 		86
B 2.1
(-3)
A 		24.5
(3)
A 		4.3
(-2.4)
A 		5.8
(-2)
A 		22
C 17.6
(-1.5)
A 		7.2
(-2.5)
A 		2
(-3)
A 		66.3
(3)
A 		64
avr 7.7
(-2.4) 		12.1
(-1.9) 		2.9
(-3) 		53.6
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 19.7
(3)
A 		4.6
(-2.4)
A 		18.8
(2.7)
A 		15.1
(1.4)
A 		7.9
(-1.2)
A 		2.8
(-3)
A 		17
B 24.2
(3)
A 		2.7
(-3)
A 		3.2
(-2.9)
A 		13.7
(0.1)
A 		4.2
(-2.6)
A 		4.5
(-2.5)
A 		22
C 1.5
(-3)
A 		3
(-2.7)
A 		30.9
(3)
A 		25.8
(2)
A 		6.2
(-2)
A 		7.2
(-1.8)
A 		29
avr 15.1
(1.7) 		3.4
(-3) 		17.6
(2.8) 		18.2
(3) 		6.1
(-1.9) 		4.8
(-2.4) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.3
(-2.7)
A 		1
(-2.8)
A 		0.6
(-3)
A 		13
(3)
A 		12
B 0.7
(-3)
A 		6
(3)
A 		1
(-2.7)
A 		1.2
(-2.4)
A 		5
C 5.8
(-0.1)
A 		2.1
(-2.2)
A 		0.7
(-3)
A 		11.2
(3)
A 		11
avr 2.6
(-1.6) 		3
(-1.3) 		0.8
(-3) 		8.5
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 3.6
(2.1)
A 		1.6
(-1.4)
A 		4.1
(3)
A 		3.8
(2.5)
A 		2.4
(0)
A 		0.7
(-3)
A 		3
B 8.4
(3)
A 		0.9
(-2.9)
A 		0.8
(-3)
A 		3.6
(-0.8)
A 		1.7
(-2.3)
A 		1.7
(-2.3)
A 		8
C 0.6
(-3)
A 		0.9
(-2.8)
A 		7.9
(3)
A 		5.2
(0.8)
A 		2
(-1.8)
A 		2.4
(-1.5)
A 		7
avr 4.2
(2.8) 		1.1
(-3) 		4.3
(3) 		4.2
(2.8) 		2
(-1.3) 		1.6
(-2.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176661_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28196
Sequence Type Exemplar sequence
Representative Public ID Y38F2AR.J NCBI
Target Description Y38F2AR.J_rc /REP_DB=WormBase Gene ID /WP=CE26517 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y38F2AR.J
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y38F2AR.J Y38F2AR.J_rc /REP_DB=WormBase Gene ID /WP=CE26517 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008353 1/11 Cross Hyb Matching Probes None
GENEFINDER00000033681 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2361357-2364144(-) 45.96 100.0
Sequence
Target Sequence 
>C. ELEGANS:176661_AT
gaaacatttctagtgaaactccgtgaaaattcgtttttttttactgaaaaactgattttt
tgcacaaaattcgggattttcatatgtaaaaatttgaagattatcaaaaaaataaaaacc
aacaattggggaaactctactccacctttaaagatttctacggaatttactactgtatta
tttttggttttttttccagagaattcttgcaattctggggtaaaaacccaatttttttga
tcaatagtatttggcacataattggtgagcacaaaaaccgatagcggcaacgcggcaagt
agatccaatgtcataaaccatccccgatcaactccatcatattgtggttgtggtggcata
aaacgatatggagattcttcttctaaatatacatatgcatttgaatcatcacgtacttcc
catgaacgatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACATTTCTAGTGAAACTCCGTG 400 355 269 Antisense
CAATTGGGGAAACTCTACTCCACCT 524 179 391 Antisense
TACTCCACCTTTAAAGATTTCTACG 137 647 406 Antisense
GTTTTTTTTCCAGAGAATTCTTGCA 180 449 455 Antisense
AAAACCGATAGCGGCAACGCGGCAA 306 129 542 Antisense
AACGCGGCAAGTAGATCCAATGTCA 533 145 557 Antisense
TCCAATGTCATAAACCATCCCCGAT 285 585 572 Antisense
CCCCGATCAACTCCATCATATTGTG 577 261 590 Antisense
AACGATATGGAGATTCTTCTTCTAA 257 145 630 Antisense
GCATTTGAATCATCACGTACTTCCC 648 307 665 Antisense
ATCACGTACTTCCCATGAACGATAT 215 27 676 Antisense
Sequence Source Affymetrix Proprietary Database