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[176658_at]

Description AC7.3 /REP_DB=WormBase Gene ID /WP=CE07653 /GB=AAB03419.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 12.4
(-2.7)
A 		13
(-2.4)
A 		11.7
(-3)
A 		24
(3)
A 		12
B 11.6
(-3)
A 		39.6
(1.7)
A 		47.6
(3)
A 		40.1
(1.8)
A 		36
C 33.1
(-1.2)
A 		42.4
(-0.4)
A 		12
(-3)
A 		81.2
(3)
A 		69
avr 19
(-3) 		31.7
(-0.4) 		23.8
(-2) 		48.4
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 54.3
(1)
A 		11.7
(-3)
A 		74.9
(3)
A 		25.6
(-1.7)
A 		40.3
(-0.3)
A 		39.6
(-0.4)
A 		63
B 45.4
(1.9)
A 		9.6
(-3)
A 		44.3
(1.7)
A 		27.4
(-0.6)
A 		41.7
(1.4)
A 		53.7
(3)
A 		44
C 9.6
(-3)
A 		63.8
(2.7)
A 		15.2
(-2.4)
A 		45.7
(0.8)
A 		66.5
(3)
A 		60.9
(2.4)
P 		57
avr 36.4
(-0.9) 		28.4
(-3) 		44.8
(1.3) 		32.9
(-1.8) 		49.5
(2.5) 		51.4
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.5
(3)
A 		2.8
(-3)
A 		3.1
(-1.9)
A 		3.5
(-0.5)
A 		2
B 3.7
(-3)
A 		9.8
(2)
A 		11
(3)
A 		8.5
(0.9)
A 		7
C 11
(1.3)
A 		12.2
(2.1)
A 		4.2
(-3)
A 		13.7
(3)
A 		10
avr 6.4
(-2.3) 		8.3
(2.3) 		6.1
(-3) 		8.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 10
(-0.1)
A 		4.2
(-3)
A 		16.3
(3)
A 		6.5
(-1.9)
A 		12.2
(1)
A 		9.7
(-0.3)
A 		12
B 15.8
(1.5)
A 		3.2
(-3)
A 		10.8
(-0.3)
A 		7.3
(-1.5)
A 		16.9
(1.9)
A 		20
(3)
A 		17
C 3.6
(-3)
A 		19.5
(2.3)
A 		3.9
(-2.9)
A 		9.2
(-1.1)
A 		21.5
(3)
A 		20.4
(2.6)
P 		18
avr 9.8
(-1.6) 		9
(-2.2) 		10.3
(-1.3) 		7.7
(-3) 		16.9
(3) 		16.7
(2.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176658_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11022
Sequence Type Exemplar sequence
Representative Public ID AC7.3 NCBI
Target Description AC7.3 /REP_DB=WormBase Gene ID /WP=CE07653 /GB=AAB03419.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068323(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068323 NCBI Caenorhabditis elegans AC7.3 (AC7.3) mRNA, complete cds. 11/11 None
SNAP00000001727 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5111829:5112865:1 11/11 None
GENEFINDER00000001732 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5111829:5112865:1 11/11 None
AC7.3 ENSEMBL cdna:known chromosome:CEL140:IV:5111631:5112865:1 gene:AC7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5111636-5112871(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl AC7.3
Entrez Gene 181802 Entrez gene
SwissProt Q7JNR0 EMBL-EBI
WormBase CE07653 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03419 Hypothetical protein AC7.3 [Caenorhabditis elegans] ref|NP_500724.1| AC7.3 [Caenorhabditis elegans] pir||T30945 hypothetical protein AC7.3 - Caenorhabditis elegans 1.0E-123
blast AAB03419 Hypothetical protein AC7.3 [Caenorhabditis elegans] ref|NP_500724.1| AC7.3 [Caenorhabditis elegans] pir||T30945 hypothetical protein AC7.3 - Caenorhabditis elegans 1.0E-117
blast CAE72742 Hypothetical protein CBG19984 [Caenorhabditis briggsae] 3.0E-62
blast CAE72742 Hypothetical protein CBG19984 [Caenorhabditis briggsae] 9.0E-62
Sequence
Target Sequence 
>C. ELEGANS:176658_AT
tcaagccagcattcaagcatttcctgacttgcgttgggttgagcgagaaggattggtacg
tcaaccgtccgcttcgatgcgaaactctgttccagcagctttccgttctttatacaatga
cttcgcaagaggatttcctgcgtatcattcgtccacattttgaagctgcaattgcagtgg
aaaatgagactcacggaaagatcaagacatccttgcaattgatcaaaaacttctactcga
atgaattcgaggagaagctcaaggaactgagtgacttggctcccgaactggagaagtatc
agaagaatcggtcgactgatcctgagcaaaatcaacagatggacaaaatcatgaatcgct
tcacggaattgcagagattgttgaaaagtatgatccaagaaggaactgcatcaatccagt
ctcaacatctcaaagcaatgcgttattcgattgaactctatcaaaaacaaaatgagcaat
ggagccgttcgtttgcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGCCAGCATTCAAGCATTTCCT 36 633 110 Antisense
GCATTTCCTGACTTGCGTTGGGTTG 630 307 126 Antisense
GAAGGATTGGTACGTCAACCGTCCG 365 333 156 Antisense
GATGCGAAACTCTGTTCCAGCAGCT 170 411 185 Antisense
GCAGCTTTCCGTTCTTTATACAATG 675 313 204 Antisense
AGAGGATTTCCTGCGTATCATTCGT 684 67 237 Antisense
CATTCGTCCACATTTTGAAGCTGCA 339 217 255 Antisense
AAGGAACTGAGTGACTTGGCTCCCG 55 151 370 Antisense
ATCGGTCGACTGATCCTGAGCAAAA 475 35 416 Antisense
CATCAATCCAGTCTCAACATCTCAA 519 213 518 Antisense
AGCAATGGAGCCGTTCGTTTGCTTC 594 75 584 Antisense
Sequence Source Affymetrix Proprietary Database