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[176655_at]

Description F44B9.4 /REP_DB=WormBase Gene ID /WP=CE00173 /GEN=cit-1.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_high_8_8 > 28      6grp_highest_nonorm > 80      6grp_total > 04      4grp_total > 21      6grp_highest_sub > De      6grp_cgc > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 228.9
(-1.2)
P 		232.1
(-1.1)
P 		194.7
(-3)
P 		310.6
(3)
P 		116
B 187.2
(3)
P 		169.4
(-2)
A 		165.8
(-3)
P 		182.2
(1.6)
P 		21
C 247.9
(3)
P 		204.4
(-0.4)
A 		170.1
(-3)
P 		221
(0.9)
P 		78
avr 221.3
(1.4) 		202
(-0.5) 		176.9
(-3) 		237.9
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 275.7
(3)
P 		215.1
(-0.1)
P 		215.6
(-0.1)
P 		157.8
(-3)
P 		241.5
(1.3)
P 		228.2
(0.6)
P 		118
B 235.5
(1.7)
P 		252
(3)
P 		206.8
(-0.6)
P 		247.1
(2.6)
P 		212.7
(-0.2)
P 		177.5
(-3)
P 		75
C 234.7
(0.7)
P 		276.5
(2.6)
P 		239.1
(0.9)
P 		286
(3)
P 		208.6
(-0.5)
P 		154
(-3)
P 		132
avr 248.6
(3) 		247.9
(2.9) 		220.5
(0.3) 		230.3
(1.2) 		220.9
(0.3) 		186.6
(-3) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 83.3
(3)
P 		50.4
(-2.2)
P 		50.9
(-2.1)
P 		45.5
(-3)
P 		38
B 59.7
(3)
P 		41.8
(-2)
A 		38.4
(-3)
P 		38.8
(-2.9)
P 		21
C 82
(3)
P 		58.8
(-0.1)
A 		59.3
(-0)
P 		37.3
(-3)
P 		45
avr 75
(3) 		50.3
(-1.3) 		49.5
(-1.4) 		40.5
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 50.8
(-1.2)
P 		76.5
(3)
P 		46.9
(-1.9)
P 		40
(-3)
P 		72.9
(2.4)
P 		55.6
(-0.4)
P 		37
B 81.9
(2.3)
P 		83.9
(2.6)
P 		50.2
(-3)
P 		65.5
(-0.5)
P 		86.4
(3)
P 		66.2
(-0.3)
P 		36
C 87
(3)
P 		84.4
(2.6)
P 		60.8
(-1.4)
P 		57.5
(-2)
P 		67.5
(-0.3)
P 		51.6
(-3)
P 		35
avr 73.2
(1.3) 		81.6
(3) 		52.6
(-3) 		54.3
(-2.6) 		75.6
(1.8) 		57.8
(-1.9) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176655_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7926
Sequence Type Exemplar sequence
Representative Public ID F44B9.4 NCBI
Target Description F44B9.4 /REP_DB=WormBase Gene ID /WP=CE00173 /GEN=cit-1.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066343(11), NM_181928(10), NM_181927(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066343 NCBI Caenorhabditis elegans CyclIn T family member (cit-1.1) (cit-1.1) mRNA, complete cds. 11/11 None
NM_181928 NCBI Caenorhabditis elegans CyclIn T family member (cit-1.1) (cit-1.1) mRNA, complete cds. 10/11 None
NM_181927 NCBI Caenorhabditis elegans CyclIn T family member (cit-1.1) (cit-1.1) mRNA, complete cds. 10/11 None
SNAP00000005264 ENSEMBL cdna:SNAP chromosome:CEL140:III:8006407:8009726:-1 9/11 None
GENEFINDER00000005277 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8006407:8009726:-1 11/11 None
F44B9.4a ENSEMBL cdna:known chromosome:CEL140:III:8005859:8009726:-1 gene:F44B9.4 11/11 None
F44B9.4c ENSEMBL cdna:known chromosome:CEL140:III:8006407:8008461:-1 gene:F44B9.4 10/11 None
F44B9.4b ENSEMBL cdna:known chromosome:CEL140:III:8006952:8009745:-1 gene:F44B9.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8006404-8009724(-) 100.0 100.0
Public Domain and Genome References
Ensembl F44B9.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28034 Cyclin t protein 1.1, isoform a [Caenorhabditis elegans] ref|NP_498744.1| CyclIn T family member (cit-1.1) [Caenorhabditis elegans] sp|P34425|CCNT1_CAEEL Cyclin T1.1 0.0
blast AAN63386 Cyclin t protein 1.1, isoform b [Caenorhabditis elegans] ref|NP_871656.1| CyclIn T family member (cit-1.1) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:176655_AT
tcggaattcctgtcaatttcaccatgcttccaaattcaacttccgtgaacatcgtcctat
gctggagaatccagacgtacggaaattagatcgtacgagagatgccagaagtcatagtcc
aatggttcatcatgtacctgattctacagtaaatgtacgaccgagagcatacgttccgag
agatgaattgacagttgaaagattaaacaaagaacgaggtgtggaagaagaacgtcggaa
acgagaacgagatcgaatggctggaaaacttgacagttcaacgagtagtgaaaagcgtgc
tcgaatagatccacttgccaacaatttcgtatcttcatcatcgtcatcaaatggaaaatt
ggccccacctccaatacctccacagcttaattttccgccaccaccaatcgtgtcatctgg
atataatcacaaaaatcagattaatcgaaagaatcatgagaataatcatacaaattcttc
ggtttcgccagcgtttgtgcccagtgctcgaacattcgacgtggctccaatgctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGAATTCCTGTCAATTTCACCAT 253 607 810 Antisense
TTTCACCATGCTTCCAAATTCAACT 225 671 826 Antisense
TCCGTGAACATCGTCCTATGCTGGA 43 595 851 Antisense
GTCCAATGGTTCATCATGTACCTGA 579 477 926 Antisense
GTACGACCGAGAGCATACGTTCCGA 652 457 964 Antisense
AGCGTGCTCGAATAGATCCACTTGC 612 81 1103 Antisense
AATTTCGTATCTTCATCATCGTCAT 388 175 1132 Antisense
ATACCTCCACAGCTTAATTTTCCGC 120 21 1183 Antisense
CCACCACCAATCGTGTCATCTGGAT 412 273 1207 Antisense
CATACAAATTCTTCGGTTTCGCCAG 238 211 1276 Antisense
AACATTCGACGTGGCTCCAATGCTT 385 137 1320 Antisense
Sequence Source Affymetrix Proprietary Database