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[176654_s_at]

Description Y69A2AR.L_rc /REP_DB=WormBase Gene ID /WP=CE22795 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster 6grp_total > 43      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 15.9
(-0.6)
A 		12.1
(-1.4)
A 		33.5
(3)
A 		4.3
(-3)
A 		29
B 16.9
(-1.2)
A 		10.5
(-3)
A 		24.3
(0.9)
A 		31.5
(3)
A 		21
C 38.7
(3)
A 		12.3
(-3)
A 		20
(-1.3)
A 		15.7
(-2.2)
A 		26
avr 23.8
(2.1) 		11.6
(-3) 		25.9
(3) 		17.2
(-0.7) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 3
(-1.2)
A 		2
(-3)
A 		5.4
(3)
A 		2.1
(-2.8)
A 		2
(-3)
A 		4.5
(1.4)
A 		3
B 34.7
(2.8)
A 		3.2
(-3)
A 		35.7
(3)
A 		15.8
(-0.7)
A 		19.3
(-0)
A 		20.5
(0.2)
A 		33
C 4.7
(-0.6)
A 		2.6
(-3)
A 		7.9
(3)
A 		5.3
(0.1)
A 		4.3
(-1.1)
A 		5
(-0.3)
A 		5
avr 14.1
(2) 		2.6
(-3) 		16.3
(3) 		7.7
(-0.8) 		8.5
(-0.4) 		10
(0.2) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5.8
(0.8)
A 		2.6
(-1.5)
A 		8.8
(3)
A 		0.6
(-3)
A 		8
B 5.4
(1.1)
A 		2.6
(-3)
A 		5.6
(1.4)
A 		6.7
(3)
A 		4
C 12.8
(3)
A 		3.5
(-2.5)
A 		7
(-0.4)
A 		2.6
(-3)
A 		10
avr 8
(3) 		2.9
(-3) 		7.1
(1.9) 		3.3
(-2.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.6
(-2.1)
A 		0.7
(-1.3)
A 		1.2
(3)
A 		0.5
(-3)
A 		0.6
(-2.1)
A 		1.1
(2.1)
A 		1
B 12.1
(3)
A 		1
(-3)
A 		8.7
(1.2)
A 		4.2
(-1.3)
A 		7.8
(0.7)
A 		7.6
(0.6)
A 		11
C 1.7
(1.5)
A 		0.8
(-3)
A 		2
(3)
A 		1.1
(-1.5)
A 		1.4
(-0)
A 		1.7
(1.5)
A 		1
avr 4.8
(3) 		0.8
(-3) 		4
(1.8) 		1.9
(-1.4) 		3.3
(0.8) 		3.5
(1.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176654_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28198
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.L NCBI
Target Description Y69A2AR.L_rc /REP_DB=WormBase Gene ID /WP=CE22795 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y69A2AR.L
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y69A2AR.L Y69A2AR.L_rc /REP_DB=WormBase Gene ID /WP=CE22795 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067818 11/11 Negative Strand Matching Probes A 
SNAP00000018807 11/11 Negative Strand Matching Probes None
GENEFINDER00000018851 11/11 Negative Strand Matching Probes None
Y69A2AR.23 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2549955-2550725(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176654_S_AT
aaaggagatctctttttcatcggcgatagtccaattgcggatgggctcatcggacccttt
ttcgtcggagttctggcagtttgtggggttcttgcaattggctttggggacaatccaact
cgtggggacatcccaatccgtggtgacactggggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGGAGATCTCTTTTTCATCGGCG 531 121 17 Antisense
GATCTCTTTTTCATCGGCGATAGTC 75 419 23 Antisense
TCATCGGCGATAGTCCAATTGCGGA 506 621 33 Antisense
CAATTGCGGATGGGCTCATCGGACC 506 179 48 Antisense
CCTTTTTCGTCGGAGTTCTGGCAGT 678 265 72 Antisense
GAGTTCTGGCAGTTTGTGGGGTTCT 67 397 84 Antisense
TGTGGGGTTCTTGCAATTGGCTTTG 44 555 98 Antisense
GGTTCTTGCAATTGGCTTTGGGGAC 511 507 103 Antisense
TGGGGACAATCCAACTCGTGGGGAC 493 551 121 Antisense
AACTCGTGGGGACATCCCAATCCGT 470 69 133 Antisense
CCCAATCCGTGGTGACACTGGGGAC 234 203 148 Antisense
Sequence Source Affymetrix Proprietary Database