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[176653_s_at]

Description Y37E11C.A_rc /REP_DB=WormBase Gene ID /WP=CE26067 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster 6grp_total > 08      4grp_total > 42      6grp_cgc > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.5
(-3)
A 		2.8
(-1.2)
A 		3.5
(3)
A 		3.1
(0.6)
A 		1
B 2.6
(-3)
A 		3.5
(3)
A 		3.4
(2.3)
A 		2.9
(-1)
A 		1
C 3.2
(-1.5)
A 		5.6
(3)
A 		2.4
(-3)
A 		3.2
(-1.5)
A 		3
avr 2.8
(-3) 		4
(3) 		3.1
(-1.5) 		3.1
(-1.5) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 4.9
(3)
A 		2.5
(-3)
A 		2.6
(-2.8)
A 		2.7
(-2.5)
A 		3.2
(-1.3)
A 		3.5
(-0.5)
A 		2
B 2.4
(0)
A 		2.5
(0.8)
A 		2.8
(3)
A 		2.5
(0.8)
A 		2.1
(-2.3)
A 		2
(-3)
A 		1
C 2.4
(-0.7)
A 		2.4
(-0.7)
A 		3.2
(3)
A 		2.8
(1.2)
A 		1.9
(-3)
A 		2.1
(-2.1)
A 		1
avr 3.2
(3) 		2.5
(-2.3) 		2.9
(0.7) 		2.7
(-0.7) 		2.4
(-3) 		2.5
(-2.3) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.9
(3)
A 		0.6
(-1.5)
A 		0.9
(3)
A 		0.5
(-3)
A 		0
B 0.8
(1)
A 		0.9
(3)
A 		0.8
(1)
A 		0.6
(-3)
A 		0
C 1.1
(0.3)
A 		1.6
(3)
A 		0.8
(-1.4)
A 		0.5
(-3)
A 		1
avr 0.9
(1.8) 		1
(3) 		0.8
(0.6) 		0.5
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 0
1 2 3 4 5 6 range
A 0.9
(1.5)
A 		0.9
(1.5)
A 		0.6
(-3)
A 		0.7
(-1.5)
A 		1
(3)
A 		0.9
(1.5)
A 		0
B 0.8
(3)
A 		0.8
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		0.8
(3)
A 		0.7
(-3)
A 		0
C 0.9
(3)
A 		0.7
(-1)
A 		0.8
(1)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.7
(-1)
A 		0
avr 0.9
(3) 		0.8
(0) 		0.7
(-3) 		0.7
(-3) 		0.8
(0) 		0.8
(0) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176653_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28189
Sequence Type Exemplar sequence
Representative Public ID Y37E11C.A NCBI
Target Description Y37E11C.A_rc /REP_DB=WormBase Gene ID /WP=CE26067 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171303(11), NM_171304(11), NM_171305(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171303 NCBI Caenorhabditis elegans UNCoordinated family member (unc-33) (unc-33) mRNA, complete cds. 11/11 A 
NM_171304 NCBI Caenorhabditis elegans UNCoordinated family member (unc-33) (unc-33) mRNA, complete cds. 11/11 None
NM_171305 NCBI Caenorhabditis elegans UNCoordinated family member (unc-33) (unc-33) mRNA, complete cds. 11/11 None
SNAP00000011889 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3522479:3525568:1 11/11 None
GENEFINDER00000011896 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3519309:3525568:1 11/11 None
Y37E11C.1a ENSEMBL cdna:known chromosome:CEL140:IV:3516818:3526598:1 gene:Y37E11C.1 11/11 A 
Y37E11C.1b ENSEMBL cdna:known chromosome:CEL140:IV:3518144:3525568:1 gene:Y37E11C.1 11/11 A 
Y37E11C.1c ENSEMBL cdna:known chromosome:CEL140:IV:3519681:3525568:1 gene:Y37E11C.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3523704-3523845(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol unc-33
Ensembl Y37E11C.1
Entrez Gene 177112 Entrez gene
SwissProt Q01630 EMBL-EBI
WormBase CE21557 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA78520 hypothetical polypeptide I [Caenorhabditis elegans] emb|CAA78516.1| unc-33 [Caenorhabditis elegans] ref|NP_741357.1| UNCoordinated family member (unc-33) [Caenorhabditis elegans] gb|AAM97965.1| Uncoordinated protein 33 [Caenorhabditis elegans] sp|Q01630|UNC33_CAEEL Uncoordinated protein 33 (Protein unc-33) 0.0
blast CAA78521 hypothetical polypeptide II [Caenorhabditis elegans] emb|CAA78517.1| hypothetical [Caenorhabditis elegans] ref|NP_741358.1| UNCoordinated family member (unc-33) [Caenorhabditis elegans] 0.0
blast CAA78522 hypothetical polypeptide III [Caenorhabditis elegans] emb|CAA78518.1| hypothetical [Caenorhabditis elegans] ref|NP_741359.1| UNCoordinated family member (unc-33) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006680 EMBL-EBI Amidohydrolase 1.9E-11
Pfam IPR006680 EMBL-EBI Amidohydrolase 1.9E-11
Pfam IPR006680 EMBL-EBI Amidohydrolase 1.9E-11
Pfam IPR006680 EMBL-EBI Amidohydrolase 1.9E-11
Pfam IPR006680 EMBL-EBI Amidohydrolase 1.9E-11
Sequence
Target Sequence 
>C. ELEGANS:176653_S_AT
catctgacggatgttccactgagacgtggggctccggatcggatgatcggagcactttcg
acgcagcctctggtggtttgtacgtccggacatcggccggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCTGACGGATGTTCCACTGAGAC 569 211 14 Antisense
CTGACGGATGTTCCACTGAGACGTG 312 237 17 Antisense
GATGTTCCACTGAGACGTGGGGCTC 57 401 23 Antisense
TGTTCCACTGAGACGTGGGGCTCCG 270 563 25 Antisense
TCCACTGAGACGTGGGGCTCCGGAT 570 587 28 Antisense
CGTGGGGCTCCGGATCGGATGATCG 614 243 38 Antisense
TGGGGCTCCGGATCGGATGATCGGA 302 549 40 Antisense
GGATCGGATGATCGGAGCACTTTCG 633 511 49 Antisense
CGGATGATCGGAGCACTTTCGACGC 591 243 53 Antisense
ACGCAGCCTCTGGTGGTTTGTACGT 623 89 74 Antisense
TTTGTACGTCCGGACATCGGCCGGT 608 303 90 Antisense
Sequence Source Affymetrix Proprietary Database