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[176651_s_at]

Description R09G11.1 /REP_DB=WormBase Gene ID /WP=CE12656 /GEN=sup-10 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 53      6grp_cgc > 51      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 113.3
(3)
P 		84.1
(-0.1)
P 		108
(2.4)
P 		56.9
(-3)
A 		56
B 140.7
(2.9)
P 		142.7
(3)
P 		71.7
(-0.8)
P 		29.3
(-3)
A 		113
C 162.9
(3)
P 		68.8
(-1.9)
P 		80.4
(-1.3)
P 		48.5
(-3)
A 		114
avr 139
(3) 		98.5
(0.4) 		86.7
(-0.3) 		44.9
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 104
(2.2)
P 		114.6
(3)
P 		69.1
(-0.4)
P 		113.7
(2.9)
P 		91.6
(1.3)
P 		35.1
(-3)
A 		80
B 96.6
(1.7)
P 		111.8
(3)
P 		79.3
(0.3)
P 		100.7
(2.1)
P 		82.3
(0.5)
M 		40.1
(-3)
A 		72
C 99.6
(1.9)
P 		89.2
(1.1)
P 		79.4
(0.4)
P 		80
(0.5)
P 		114.5
(3)
P 		32.8
(-3)
A 		82
avr 100.1
(2.6) 		105.2
(3) 		75.9
(0.5) 		98.1
(2.4) 		96.1
(2.2) 		36
(-3) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 41.3
(3)
P 		18.3
(-1.2)
P 		28.2
(0.6)
P 		8.3
(-3)
A 		33
B 44.9
(3)
P 		35.3
(1.5)
P 		16.6
(-1.4)
P 		6.2
(-3)
A 		39
C 53.9
(3)
P 		19.8
(-1.5)
P 		28
(-0.4)
P 		8.2
(-3)
A 		46
avr 46.7
(3) 		24.5
(-0.4) 		24.3
(-0.4) 		7.6
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 19.2
(-1)
P 		40.8
(3)
P 		15.1
(-1.8)
P 		28.8
(0.8)
P 		27.7
(0.6)
P 		8.5
(-3)
A 		32
B 33.6
(2)
P 		37.2
(3)
P 		19.3
(-1.8)
P 		26.7
(0.2)
P 		33.4
(2)
M 		14.9
(-3)
A 		22
C 36.9
(3)
P 		27.2
(0.7)
P 		20.2
(-0.9)
P 		16.1
(-1.8)
P 		37
(3)
P 		11
(-3)
A 		26
avr 29.9
(1.7) 		35.1
(3) 		18.2
(-1.3) 		23.9
(0.2) 		32.7
(2.4) 		11.5
(-3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176651_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17375
Sequence Type Exemplar sequence
Representative Public ID R09G11.1 NCBI
Target Description R09G11.1 /REP_DB=WormBase Gene ID /WP=CE12656 /GEN=sup-10 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078434(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078434 NCBI Caenorhabditis elegans SUPpressor family member (sup-10) (sup-10) mRNA, complete cds. 11/11 None
R09G11.1 ENSEMBL cdna:known chromosome:CEL140:X:17528304:17531891:1 gene:R09G11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17528318-17531668(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sup-10
Ensembl R09G11.1
Entrez Gene 181784 Entrez gene
SwissProt Q17374 EMBL-EBI
WormBase CE12656 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_510835 SUPpressor family member (sup-10) [Caenorhabditis elegans] gb|AAC48175.1| Suppressor protein 10 [Caenorhabditis elegans] sp|Q17374|SUP10_CAEEL Putative potassium channel regulatory protein sup-10 precursor (Suppressor of unc-93 protein 10) gb|AAB61087.1| SUP-10 precursor 0.0
blast CAE58692 Hypothetical protein CBG01870 [Caenorhabditis briggsae] 1.0E-158
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510835.1 2 4-21,302-324
R09G11.1 2 4-21,302-324
Sequence
Target Sequence 
>C. ELEGANS:176651_S_AT
tctctctgacacatcaaactgctccagcaaatatctcctactagctgataggccaaagtg
tcctcagccatcttggtcaatagtagccagaatagcccaagatcacgggatccaaccggt
caaaatcggccatccattagatggattgacgcatgtattgctatacaaacggatgcccta
tctctctgaagcatcgtgtcatttatcagttctcttgtacgaaaacagttattccgactt
tggtgatgacatcaatccattagttgtatccgactggataacaacgttacttccgcttga
agaaggaagttgtcccgcactttttgagacgtattggcatccgattgtag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCTCTGACACATCAAACTGCTCC 359 611 492 Antisense
TGCTCCAGCAAATATCTCCTACTAG 418 581 511 Antisense
GATAGGCCAAAGTGTCCTCAGCCAT 128 421 538 Antisense
TGTCCTCAGCCATCTTGGTCAATAG 397 557 550 Antisense
AAGATCACGGGATCCAACCGGTCAA 338 155 590 Antisense
AACCGGTCAAAATCGGCCATCCATT 63 141 605 Antisense
GGATGCCCTATCTCTCTGAAGCATC 246 513 662 Antisense
AGCATCGTGTCATTTATCAGTTCTC 2 79 681 Antisense
GATAACAACGTTACTTCCGCTTGAA 483 421 768 Antisense
TTGTCCCGCACTTTTTGAGACGTAT 98 705 801 Antisense
GAGACGTATTGGCATCCGATTGTAG 709 393 817 Antisense
Sequence Source Affymetrix Proprietary Database