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[176645_s_at]

Description C32E8.10E /REP_DB=WormBase Gene ID /WP=CE23565 /GEN=unc-11 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 45      6grp_cgc > 25      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 227.2
(3)
P 		137.1
(-0.4)
A 		74.1
(-2.9)
A 		70.2
(-3)
A 		157
B 213
(3)
A 		147.5
(0.5)
A 		58.2
(-3)
A 		93.6
(-1.6)
A 		155
C 199.3
(3)
A 		162.9
(1)
A 		87.7
(-3)
A 		113.8
(-1.6)
A 		112
avr 213.2
(3) 		149.2
(0.3) 		73.3
(-3) 		92.5
(-2.2) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 121
(3)
A 		83.2
(0.9)
A 		67.5
(0)
A 		49.1
(-1)
A 		13.2
(-3)
A 		93.3
(1.5)
A 		108
B 115.3
(3)
A 		114.5
(3)
A 		110.7
(2.7)
A 		9.6
(-3)
A 		64.9
(0.1)
A 		104.4
(2.4)
A 		106
C 36.6
(-1.9)
A 		151
(3)
A 		28.9
(-2.2)
A 		77.1
(-0.2)
A 		11.3
(-3)
A 		93.7
(0.5)
A 		140
avr 91
(1.3) 		116.2
(3) 		69
(-0.3) 		45.3
(-1.9) 		29.8
(-3) 		97.1
(1.7) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 82.7
(3)
P 		29.8
(-1.4)
A 		19.4
(-2.2)
A 		10.3
(-3)
A 		72
B 67.9
(3)
A 		36.4
(-0.5)
A 		13.5
(-3)
A 		20
(-2.3)
A 		54
C 66
(3)
A 		46.8
(0.5)
A 		30.6
(-1.5)
A 		19.2
(-3)
A 		47
avr 72.2
(3) 		37.7
(-0.7) 		21.2
(-2.5) 		16.5
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 22.3
(1.3)
A 		29.6
(3)
A 		14.7
(-0.5)
A 		12.5
(-1)
A 		4
(-3)
A 		22.7
(1.4)
A 		26
B 40.1
(3)
A 		38.1
(2.7)
A 		26.9
(0.9)
A 		2.5
(-3)
A 		26.4
(0.8)
A 		38.9
(2.8)
A 		38
C 13.6
(-1.6)
A 		46.1
(3)
A 		7.4
(-2.5)
A 		15.5
(-1.3)
A 		3.7
(-3)
A 		31.4
(0.9)
A 		42
avr 25.3
(0.3) 		37.9
(3) 		16.3
(-1.7) 		10.2
(-3) 		11.4
(-2.7) 		31
(1.5) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176645_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.172
Sequence Type Exemplar sequence
Representative Public ID C32E8.10E NCBI
Target Description C32E8.10E /REP_DB=WormBase Gene ID /WP=CE23565 /GEN=unc-11 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058829(11), NM_001025845(11), NM_001025843(11), NM_001025844(11), NM_058827(11), NM_058826(11), NM_058828(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058829 NCBI Caenorhabditis elegans UNCoordinated family member (unc-11) (unc-11) mRNA, complete cds. 11/11 None
NM_001025845 NCBI Caenorhabditis elegans UNCoordinated family member (unc-11) (unc-11) mRNA, complete cds. 11/11 None
NM_001025843 NCBI Caenorhabditis elegans UNCoordinated family member (unc-11) (unc-11) mRNA, complete cds. 11/11 None
NM_001025844 NCBI Caenorhabditis elegans UNCoordinated family member (unc-11) (unc-11) mRNA, complete cds. 11/11 None
NM_058827 NCBI Caenorhabditis elegans UNCoordinated family member (unc-11) (unc-11) mRNA, complete cds. 11/11 None
NM_058826 NCBI Caenorhabditis elegans UNCoordinated family member (unc-11) (unc-11) mRNA, complete cds. 11/11 None
NM_058828 NCBI Caenorhabditis elegans UNCoordinated family member (unc-11) (unc-11) mRNA, complete cds. 11/11 None
SNAP00000040657 ENSEMBL cdna:SNAP chromosome:CEL140:I:3799207:3805706:-1 11/11 None
GENEFINDER00000040668 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3799207:3806810:-1 11/11 None
C32E8.10c ENSEMBL cdna:known chromosome:CEL140:I:3798463:3805720:-1 gene:C32E8.10 11/11 A 
C32E8.10f ENSEMBL cdna:known chromosome:CEL140:I:3799126:3805706:-1 gene:C32E8.10 11/11 A 
C32E8.10e ENSEMBL cdna:known chromosome:CEL140:I:3799173:3805706:-1 gene:C32E8.10 11/11 None
C32E8.10b ENSEMBL cdna:known chromosome:CEL140:I:3799173:3805706:-1 gene:C32E8.10 11/11 A 
C32E8.10h ENSEMBL cdna:known chromosome:CEL140:I:3799173:3805706:-1 gene:C32E8.10 11/11 A 
C32E8.10d ENSEMBL cdna:known chromosome:CEL140:I:3799207:3805706:-1 gene:C32E8.10 11/11 A 
C32E8.10a ENSEMBL cdna:known chromosome:CEL140:I:3799207:3805706:-1 gene:C32E8.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3799172-3805706(-) 100.0 100.0
Public Domain and Genome References
Ensembl C32E8.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68218 Uncoordinated protein 11, isoform h [Caenorhabditis elegans] ref|NP_001021016.1| UNCoordinated family member (unc-11) [Caenorhabditis elegans] gb|AAD37366.1| AP180-like adaptor protein [Caenorhabditis elegans] 0.0
blast AAK68213 Uncoordinated protein 11, isoform b [Caenorhabditis elegans] ref|NP_001021014.1| UNCoordinated family member (unc-11) [Caenorhabditis elegans] gb|AAD37367.1| AP180-like adaptor protein [Caenorhabditis elegans] 0.0
blast AAK68212 Uncoordinated protein 11, isoform a [Caenorhabditis elegans] ref|NP_491227.1| UNCoordinated family member (unc-11) [Caenorhabditis elegans] gb|AAD37365.1| AP180-like adaptor protein [Caenorhabditis elegans] sp|Q9XZI6|PICA_CAEEL Phosphatidylinositol-binding clathrin assembly protein unc-11 (AP180-like adaptor protein) (Uncoordinated protein 11) 0.0
blast AAK68216 Uncoordinated protein 11, isoform e [Caenorhabditis elegans] ref|NP_001021015.1| UNCoordinated family member (unc-11) [Caenorhabditis elegans] 0.0
blast AAK68215 Uncoordinated protein 11, isoform d [Caenorhabditis elegans] ref|NP_491229.1| UNCoordinated family member (unc-11) [Caenorhabditis elegans] 0.0
blast AAK68214 Uncoordinated protein 11, isoform c [Caenorhabditis elegans] ref|NP_491228.1| UNCoordinated family member (unc-11) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001026 EMBL-EBI Epsin N-terminal homology 1.1E-44
Pfam IPR001026 EMBL-EBI Epsin N-terminal homology 1.1E-44
Sequence
Target Sequence 
>C. ELEGANS:176645_S_AT
acaaagttgccgaattccttcgcgtcgccgaatccgtcggaatcgaccgtggagagattc
cagatttgacacgtgctccagcgagtcttctcgaagcacttgaagctcatctcatccatc
tcgaaggaggaaaagctccaccaccaactcaacaacatgttgcaccacatcaattcacca
ctggattcgcattttctcaacaaccacaaccggcacttggtgacgctgaacgacaacggt
atattgagttggaacaagagagattgagacagtttgaagatcagaagaaatcgattaatt
ctgcaaatccattcgcaaatgatgtcgcttcggctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAAGTTGCCGAATTCCTTCGCGT 503 111 797 Antisense
GTCGCCGAATCCGTCGGAATCGACC 98 475 820 Antisense
AGATTCCAGATTTGACACGTGCTCC 496 65 851 Antisense
GCTCCAGCGAGTCTTCTCGAAGCAC 126 299 871 Antisense
AGGAGGAAAAGCTCCACCACCAACT 47 57 921 Antisense
ATGTTGCACCACATCAATTCACCAC 364 47 953 Antisense
TCAATTCACCACTGGATTCGCATTT 419 633 966 Antisense
CAACCACAACCGGCACTTGGTGACG 360 187 997 Antisense
GACGCTGAACGACAACGGTATATTG 157 375 1018 Antisense
TAATTCTGCAAATCCATTCGCAAAT 170 635 1092 Antisense
TTCGCAAATGATGTCGCTTCGGCTG 703 693 1108 Antisense
Sequence Source Affymetrix Proprietary Database