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[176644_at]

Description T22C1.1 /REP_DB=WormBase Gene ID /WP=CE06489 /GB=CAA99920.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 70      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 75      6grp_total > 80      4grp_total > 15      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 623
1 2 3 4 range
A 957.2
(2)
P 		433.7
(-3)
P 		732.6
(-0.1)
P 		1056.8
(3)
P 		623
B 904.3
(3)
P 		663.4
(-3)
P 		687.5
(-2.4)
P 		900.6
(2.9)
P 		241
C 978.2
(3)
P 		677.1
(-1.6)
P 		585.2
(-3)
P 		897.6
(1.8)
P 		393
avr 946.6
(2.9) 		591.4
(-3) 		668.4
(-1.7) 		951.7
(3) 		360

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 836
1 2 3 4 5 6 range
A 917.2
(2.4)
P 		956.7
(3)
P 		753.2
(-0.2)
P 		873.2
(1.7)
P 		711.2
(-0.9)
P 		574.2
(-3)
P 		383
B 752.3
(-3)
P 		848.6
(0.3)
P 		797.6
(-1.5)
P 		929.6
(3)
P 		833.9
(-0.2)
P 		792.9
(-1.6)
P 		177
C 838.1
(0.2)
P 		897.9
(0.6)
P 		655.4
(-1.1)
P 		1231.6
(3)
P 		395.2
(-3)
P 		874.2
(0.4)
P 		836
avr 835.9
(0.1) 		901.1
(1.2) 		735.4
(-1.5) 		1011.5
(3) 		646.8
(-3) 		747.1
(-1.3) 		365
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 348.5
(3)
P 		94.1
(-3)
P 		191.5
(-0.7)
P 		154.7
(-1.6)
P 		254
B 288.4
(3)
P 		163.8
(-2.8)
P 		159.3
(-3)
P 		191.9
(-1.5)
P 		129
C 323.8
(3)
P 		194.7
(-1.5)
P 		204
(-1.2)
P 		151.4
(-3)
P 		172
avr 320.2
(3) 		150.9
(-3) 		184.9
(-1.8) 		166
(-2.5) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 169.1
(-2.1)
P 		340.2
(3)
P 		164
(-2.3)
P 		221.5
(-0.6)
P 		214.6
(-0.8)
P 		139.8
(-3)
P 		200
B 261.8
(-0.2)
P 		282.5
(0.7)
P 		193.7
(-3)
P 		246.2
(-0.8)
P 		338.8
(3)
P 		295.7
(1.2)
P 		145
C 310.6
(3)
P 		274
(1.8)
P 		166.8
(-1.7)
P 		247.7
(0.9)
P 		127.9
(-3)
P 		292.6
(2.4)
P 		183
avr 247.2
(0.5) 		298.9
(3) 		174.8
(-3) 		238.5
(0.1) 		227.1
(-0.5) 		242.7
(0.3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176644_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2407
Sequence Type Exemplar sequence
Representative Public ID T22C1.1 NCBI
Target Description T22C1.1 /REP_DB=WormBase Gene ID /WP=CE06489 /GB=CAA99920.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059786(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059786 NCBI Caenorhabditis elegans T22C1.1 (T22C1.1) mRNA, complete cds. 11/11 None
SNAP00000000045 ENSEMBL cdna:SNAP chromosome:CEL140:I:7944392:7945777:1 10/11 None
GENEFINDER00000000064 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7944392:7945777:1 11/11 None
T22C1.1 ENSEMBL cdna:known chromosome:CEL140:I:7944384:7946455:1 gene:T22C1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7944055-7945708(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22C1.1
Entrez Gene 172563 Entrez gene
SwissProt Q22662 EMBL-EBI
WormBase CE36611 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:254177_AT PHD finger protein-related at
CANINE:1583879_AT similar to Protein C14orf130 cfa
CANINE_2:CFA.11873.1.A1_AT similar to Protein C14orf130 cfa
CANINE_2:CFAAFFX.26915.1.S1_AT similar to Protein C14orf130 cfa
CANINE_2:CFAAFFX.26915.1.S1_S_AT similar to Protein C14orf130 cfa
CANINE_2:CFAAFFX.26919.1.S1_AT similar to Protein C14orf130 cfa
DROSOPHILA_2:1625978_AT dm
DROSGENOME1:154299_AT dm
HG-U95B:45423_AT chromosome 14 open reading frame 130 hs
HG-U133A_2:218108_AT chromosome 14 open reading frame 130 hs
HG-U133A:218108_AT chromosome 14 open reading frame 130 hs
HG-U133_PLUS_2:218108_AT chromosome 14 open reading frame 130 hs
HU35KSUBA:RC_AA465468_AT chromosome 14 open reading frame 130 hs
HU35KSUBA:RC_AA040157_AT chromosome 14 open reading frame 130 hs
HU35KSUBD:RC_H81387_S_AT chromosome 14 open reading frame 130 hs
U133_X3P:G8922451_3P_AT chromosome 14 open reading frame 130 hs
HG-U95B:54081_AT chromosome 14 open reading frame 130 hs
MG-U74AV2:98047_AT RIKEN cDNA 5730410I19 gene mm
MOE430A:1454616_AT RIKEN cDNA 5730410I19 gene mm
MOUSE430A_2:1454616_AT RIKEN cDNA 5730410I19 gene mm
MOUSE430_2:1454616_AT RIKEN cDNA 5730410I19 gene mm
MOE430A:1433479_AT RIKEN cDNA 5730410I19 gene mm
MOUSE430A_2:1433479_AT RIKEN cDNA 5730410I19 gene mm
MOUSE430_2:1433479_AT RIKEN cDNA 5730410I19 gene mm
MU19KSUBA:TC16096_AT RIKEN cDNA 5730410I19 gene, mRNA (cDNA clone MGC:122967 IMAGE:6812389) mm
MU19KSUBC:TC39669_AT RIKEN cDNA 5730410I19 gene, mRNA (cDNA clone MGC:122967 IMAGE:6812389) mm
RG-U34C:RC_AI230046_AT similar to chromosome 14 open reading frame 130 rn
RAE230A:1388739_AT similar to chromosome 14 open reading frame 130 rn
RAT230_2:1388739_AT similar to chromosome 14 open reading frame 130 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6512 ubiquitin cycle inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4842 ubiquitin-protein ligase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99920 Hypothetical protein T22C1.1 [Caenorhabditis elegans] ref|NP_492187.2| T22C1.1 [Caenorhabditis elegans] 0.0
blast CAE63726 Hypothetical protein CBG08251 [Caenorhabditis briggsae] 1.0E-119
blast CAE63726 Hypothetical protein CBG08251 [Caenorhabditis briggsae] 1.0E-117
blast XP_394203 PREDICTED: similar to CG15141-PA [Apis mellifera] 1.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR003126 EMBL-EBI Zn-finger (putative), N-recognin 1.1E-30
Sequence
Target Sequence 
>C. ELEGANS:176644_AT
gaaaagagctcctacagtgtgaaatttgcgaagattggtttcacgaagagcatatgccgt
tcaaggatgtgaattattattacgaggaaatcgaagcaaatagcgatacaattctcaata
gagatatcgcatcagccgtctgtctggtatgtatcaaaaaacttcctttcctgatgcaca
tgaaatctggcaaagatgtattctgccattctaagctgatcgccgaagaaacgaaacctg
aaccacatgctctatgtattgaacattttcgtgcaaaactttgcaaatgtgccgattgtg
ttcgtgtctatgagatggcagattgtgaatttctactggacgatgaagatgatattgcca
cattcgacagtgaatcaagaaaaaaagtcgaggagaacaagacaactgaagatgatgaaa
tgagagaaatggtaaaacaaataggcatggacggagcgcaacacttttattcagaagttc
ataatttcaaacgaaagctggaagactttttaaatacaaaagcggaaggtggaagaacaa
ttgctgcttctgacattaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAGAGCTCCTACAGTGTGAAAT 61 355 644 Antisense
GAGCATATGCCGTTCAAGGATGTGA 326 389 691 Antisense
TAGAGATATCGCATCAGCCGTCTGT 79 653 762 Antisense
AGCCGTCTGTCTGGTATGTATCAAA 301 83 777 Antisense
CAAAAAACTTCCTTTCCTGATGCAC 334 191 798 Antisense
TCTGCCATTCTAAGCTGATCGCCGA 604 609 845 Antisense
GAAACCTGAACCACATGCTCTATGT 527 357 876 Antisense
ATGTGCCGATTGTGTTCGTGTCTAT 598 49 930 Antisense
GATATTGCCACATTCGACAGTGAAT 309 427 994 Antisense
GACGGAGCGCAACACTTTTATTCAG 291 377 1093 Antisense
GAACAATTGCTGCTTCTGACATTAA 330 353 1178 Antisense
Sequence Source Affymetrix Proprietary Database