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[176643_at]

Description Y46E12BL.A_rc /REP_DB=WormBase Gene ID /WP=CE26535 /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster 6grp_total > 91      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 57.3
(3)
A 		33
(0.3)
A 		2.5
(-3)
A 		11.1
(-2.1)
A 		55
B 40.7
(3)
A 		40.5
(3)
A 		2.4
(-3)
A 		13.2
(-1.3)
A 		38
C 19.5
(-1.1)
A 		51.9
(3)
A 		39.4
(1.4)
A 		4.5
(-3)
A 		47
avr 39.2
(2.5) 		41.8
(3) 		14.8
(-2) 		9.6
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 5.6
(-2.2)
A 		6.7
(-1.9)
A 		3.5
(-2.9)
A 		17.2
(1.6)
A 		21.5
(3)
A 		3.3
(-3)
A 		18
B 34
(3)
A 		4.9
(-3)
A 		15.6
(-0.8)
A 		29.6
(2.1)
A 		31.2
(2.4)
A 		9.7
(-2)
A 		29
C 19
(-1.1)
A 		6.1
(-2.6)
A 		2.8
(-3)
A 		54.2
(3)
A 		41.2
(1.5)
A 		13.7
(-1.7)
A 		51
avr 19.5
(-0.1) 		5.9
(-3) 		7.3
(-2.7) 		33.7
(3) 		31.3
(2.5) 		8.9
(-2.4) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20.9
(3)
A 		7.2
(-1.1)
A 		0.7
(-3)
A 		1.6
(-2.7)
A 		20
B 13
(3)
A 		10
(1.5)
A 		0.6
(-3)
A 		2.8
(-1.9)
A 		12
C 6.5
(-0.6)
A 		14.9
(3)
A 		13.7
(2.5)
A 		0.8
(-3)
A 		14
avr 13.5
(3) 		10.7
(1.6) 		5
(-1.3) 		1.7
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1
(-2.8)
A 		2.4
(-1.3)
A 		0.8
(-3)
A 		4.4
(0.8)
A 		6.5
(3)
A 		0.8
(-3)
A 		6
B 11.8
(2.5)
A 		1.6
(-3)
A 		3.8
(-1.8)
A 		7.8
(0.4)
A 		12.7
(3)
A 		3.6
(-1.9)
A 		11
C 7
(-0)
A 		1.9
(-2.4)
A 		0.7
(-3)
A 		10.9
(1.9)
A 		13.3
(3)
A 		4.6
(-1.1)
A 		13
avr 6.6
(0.2) 		2
(-2.9) 		1.8
(-3) 		7.7
(0.9) 		10.8
(3) 		3
(-2.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176643_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28185
Sequence Type Exemplar sequence
Representative Public ID Y46E12BL.A NCBI
Target Description Y46E12BL.A_rc /REP_DB=WormBase Gene ID /WP=CE26535 /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y46E12BL.A
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y46E12BL.A Y46E12BL.A_rc /REP_DB=WormBase Gene ID /WP=CE26535 /CHR=3 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018033 10/11 Negative Strand Matching Probes None
GENEFINDER00000018041 10/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15218455-15220243(-) 73.99 100.0
Sequence
Target Sequence 
>C. ELEGANS:176643_AT
gatgccatcgatattggttctctggagcgagaaaaaaacacacacacacacacacattgg
aatatgtattttttgaatcattgttattatcactactatctgtatcatactcgttcaaat
aatactgccagagtagtgcatggacattcgtcgtaaactcgtgcccattgccagaacggg
attgtgccaaatagaaaatgctctgcaagatctcttcactgagccgggacactaggtcct
cggggatcggcggctggctgagcacggaagatgattcgggggtgggtggaggagcgtcga
cgacgcttcgtctccgcttctgatcgtgaattagcagcttcgggttgtcttgttggcatc
gctttagcgggttttgtggtggtggcggtggtgttgtatcaagtttgaaattcgacgatt
gtagcagggaaatggaatcggcgcgtcgaggccgtaggcttttgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCCATCGATATTGGTTCTCTGG 67 415 429 Antisense
GGACATTCGTCGTAAACTCGTGCCC 644 523 570 Antisense
TCGTGCCCATTGCCAGAACGGGATT 682 603 587 Antisense
TCTTCACTGAGCCGGGACACTAGGT 525 609 641 Antisense
GTGGGTGGAGGAGCGTCGACGACGC 709 421 710 Antisense
AATTAGCAGCTTCGGGTTGTCTTGT 433 173 757 Antisense
GTTGTCTTGTTGGCATCGCTTTAGC 212 437 772 Antisense
TCGCTTTAGCGGGTTTTGTGGTGGT 205 589 787 Antisense
GGTGGCGGTGGTGTTGTATCAAGTT 93 499 809 Antisense
GCAGGGAAATGGAATCGGCGCGTCG 109 311 852 Antisense
CGCGTCGAGGCCGTAGGCTTTTGAG 484 253 870 Antisense
Sequence Source Affymetrix Proprietary Database