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[176642_at]

Description F58H1.5 /REP_DB=WormBase Gene ID /WP=CE06029 /GB=CAB00108.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 23      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 61      6grp_total > 03      4grp_total > 45      6grp_highest_sub > 02      6grp_high1_sub > 02      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 423.4
(3)
P 		290.5
(-0.6)
P 		226.1
(-2.3)
P 		199.9
(-3)
P 		224
B 354.9
(2.5)
P 		368.5
(3)
P 		216
(-2.1)
P 		188.1
(-3)
P 		180
C 408.5
(3)
P 		329.7
(0.3)
P 		320.6
(0)
P 		230.9
(-3)
P 		178
avr 395.6
(3) 		329.6
(0.9) 		254.2
(-1.5) 		206.3
(-3) 		189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 341
1 2 3 4 5 6 range
A 416.3
(1.2)
P 		501.8
(3)
P 		386.3
(0.6)
P 		429.6
(1.5)
P 		305.5
(-1.1)
P 		213.6
(-3)
P 		288
B 554.1
(3)
P 		527.6
(2.4)
P 		373
(-1)
P 		452.9
(0.7)
P 		284.5
(-3)
P 		319.6
(-2.2)
P 		270
C 477.7
(1.8)
P 		529.9
(3)
P 		327
(-1.8)
P 		417.6
(0.3)
P 		284.5
(-2.8)
P 		276.3
(-3)
P 		254
avr 482.7
(2.1) 		519.8
(3) 		362.1
(-0.8) 		433.4
(0.9) 		291.5
(-2.5) 		269.8
(-3) 		250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 154.2
(3)
P 		63.1
(-1.4)
P 		59.1
(-1.6)
P 		29.3
(-3)
P 		125
B 113.2
(3)
P 		91
(1.2)
P 		50.1
(-2.2)
P 		40.1
(-3)
P 		73
C 135.2
(3)
P 		94.8
(0.5)
P 		111.7
(1.5)
P 		38.9
(-3)
P 		96
avr 134.2
(3) 		83
(-0.1) 		73.6
(-0.7) 		36.1
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 76.7
(-1.8)
P 		178.4
(3)
P 		84.1
(-1.5)
P 		108.9
(-0.3)
P 		92.2
(-1.1)
P 		52
(-3)
P 		126
B 192.8
(3)
P 		175.6
(2)
P 		90.6
(-3)
P 		120
(-1.3)
P 		115.6
(-1.5)
P 		119.2
(-1.3)
P 		102
C 177.1
(3)
P 		161.7
(2)
P 		83.2
(-3)
P 		84
(-2.9)
P 		92
(-2.4)
P 		92.5
(-2.4)
P 		94
avr 148.9
(1.4) 		171.9
(3) 		86
(-3) 		104.3
(-1.7) 		99.9
(-2) 		87.9
(-2.9) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176642_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12636
Sequence Type Exemplar sequence
Representative Public ID F58H1.5 NCBI
Target Description F58H1.5 /REP_DB=WormBase Gene ID /WP=CE06029 /GB=CAB00108.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073599(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073599 NCBI Caenorhabditis elegans F58H1.5 (F58H1.5) mRNA, complete cds. 11/11 None
SNAP00000006512 ENSEMBL cdna:SNAP chromosome:CEL140:V:11963782:11965115:1 11/11 None
GENEFINDER00000006519 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11960992:11965115:1 11/11 None
F58H1.5.2 ENSEMBL cdna:known chromosome:CEL140:V:11960979:11965260:1 gene:F58H1.5 11/11 None
F58H1.5.1 ENSEMBL cdna:known chromosome:CEL140:V:11960981:11965260:1 gene:F58H1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11960991-11965115(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58H1.5
Entrez Gene 179635 Entrez gene
SwissProt Q21014 EMBL-EBI
WormBase CE06029 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00108 Hypothetical protein F58H1.5 [Caenorhabditis elegans] ref|NP_506000.1| F58H1.5 [Caenorhabditis elegans] 1.0E-124
blast CAE75357 Hypothetical protein CBG23340 [Caenorhabditis briggsae] 1.0E-116
blast CAB00108 Hypothetical protein F58H1.5 [Caenorhabditis elegans] ref|NP_506000.1| F58H1.5 [Caenorhabditis elegans] 3.0E-94
blast CAE75357 Hypothetical protein CBG23340 [Caenorhabditis briggsae] 2.0E-88
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506000.1 1 64-86
F58H1.5.2 1 64-86
F58H1.5.1 1 64-86
GENEFINDER00000006519 1 64-86
Sequence
Target Sequence 
>C. ELEGANS:176642_AT
ggtggaccaccagcagtgctaatgtactcgaatcagtcaaatgctggaagtcgactattc
catcatacgccaactacaatgagatcatatgtagttggttcaggaactccgataatggga
tcacaacatataccaattcgacattccgaatctacaacgttacgattgaatccaggagat
ggatgttcagcatatcatacagtttctgttagcaggcagaatggatgtccaccatctgaa
gtttacgaagagattgcacctattggtacaatgggacatgttggatatatgacaacgcga
ccaaatatgggcaatatgactccaatgaataatatgaataatcgaatgtcacttcgaaaa
cctccaccaacatgccgtccacctcaacctccacaaagtcctgtaccaagtgatggaagt
tatgaaattactcgaataactggaacatcatctgattctccacgtgatcgacaatggaat
gaagatggcagagaaagtggttatggtacagctccaagtttacaatggaagagcccatct
ggaagtgctcgtttaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGGACCACCAGCAGTGCTAATGT 292 499 391 Antisense
GAAGTCGACTATTCCATCATACGCC 76 337 437 Antisense
GGATCACAACATATACCAATTCGAC 508 511 508 Antisense
CGACATTCCGAATCTACAACGTTAC 685 239 529 Antisense
TTAGCAGGCAGAATGGATGTCCACC 620 681 599 Antisense
GATGTCCACCATCTGAAGTTTACGA 358 407 614 Antisense
ACGAAGAGATTGCACCTATTGGTAC 291 91 635 Antisense
CGAATGTCACTTCGAAAACCTCCAC 351 251 733 Antisense
TCATCTGATTCTCCACGTGATCGAC 145 621 838 Antisense
GTTATGGTACAGCTCCAAGTTTACA 697 443 890 Antisense
GCCCATCTGGAAGTGCTCGTTTAGA 103 285 923 Antisense
Sequence Source Affymetrix Proprietary Database