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[176641_at]

Description Y92H12BL.A_rc /REP_DB=WormBase Gene ID /WP=CE26606 /CHR=1 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster 6grp_total > 21      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 16.7
(-2.5)
A 		24.8
(-2.1)
A 		5.8
(-3)
A 		131.2
(3)
A 		125
B 35
(0.6)
A 		45.5
(2.9)
A 		46
(3)
A 		18.6
(-3)
A 		27
C 11.4
(-1.5)
A 		33.4
(3)
A 		4.3
(-3)
A 		23
(0.9)
A 		29
avr 21
(-2.6) 		34.6
(-0.5) 		18.7
(-3) 		57.6
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 12.9
(-2.5)
A 		36.8
(-0.5)
A 		78.5
(3)
A 		6.5
(-3)
A 		58.3
(1.3)
A 		31.2
(-0.9)
A 		72
B 60.9
(3)
A 		50.2
(1.9)
A 		47.5
(1.6)
A 		41.4
(0.9)
A 		39.9
(0.7)
A 		5
(-3)
A 		56
C 7.5
(-3)
A 		41.6
(3)
A 		10.6
(-2.5)
A 		14.7
(-1.7)
A 		11
(-2.4)
A 		21.1
(-0.6)
A 		34
avr 27.1
(-1.2) 		42.9
(2.4) 		45.5
(3) 		20.9
(-2.6) 		36.4
(0.9) 		19.1
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 6.1
(-1.4)
A 		5.4
(-1.7)
A 		1.5
(-3)
A 		19.2
(3)
A 		18
B 11.2
(3)
A 		11.2
(3)
A 		10.7
(2.6)
A 		4
(-3)
A 		7
C 3.8
(-1.3)
A 		9.6
(3)
A 		1.5
(-3)
A 		3.9
(-1.2)
A 		8
avr 7
(0.3) 		8.7
(2.6) 		4.6
(-3) 		9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.4
(-2.7)
A 		13.1
(1.3)
A 		17.1
(2.8)
A 		1.7
(-3)
A 		17.6
(3)
A 		7.6
(-0.8)
A 		16
B 21.2
(3)
A 		16.7
(1.6)
A 		11.5
(-0)
A 		11
(-0.2)
A 		16.2
(1.4)
A 		1.9
(-3)
A 		19
C 2.8
(-2.9)
A 		12.7
(3)
A 		2.7
(-3)
A 		3
(-2.8)
A 		3.6
(-2.5)
A 		7.1
(-0.4)
A 		10
avr 8.8
(-0.6) 		14.2
(3) 		10.4
(0.5) 		5.2
(-3) 		12.5
(1.9) 		5.5
(-2.8) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176641_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28170
Sequence Type Exemplar sequence
Representative Public ID Y92H12BL.A NCBI
Target Description Y92H12BL.A_rc /REP_DB=WormBase Gene ID /WP=CE26606 /CHR=1 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y92H12BL.A
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y92H12BL.A Y92H12BL.A_rc /REP_DB=WormBase Gene ID /WP=CE26606 /CHR=1 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058445 11/11 Negative Strand Matching Probes A 
Y92H12BL.4 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1379152-1385058(+) 79.25 100.0
Sequence
Target Sequence 
>C. ELEGANS:176641_AT
aggaactcgttaagcttctcgttgatcgcttctgttgggaaaatgaatgcaagcactatt
gctagaagttcccagcctcgtcgtatttcttctattaatatggctgcaatactatttttc
gatggccttcccgcttgcaatactaatagggaggccatattaatagaagaaatacagtaa
ctttttttttcgttaaaactcaaaaaaaaaatctgtatttcttctattaatatggcctcc
ctattagtattgcaagcgggaaggccatcgaaaaatagtattgcagccatataaaaaaaa
aatttcaaaaaaaaaacattttcattttgaatttttttctttttttttccgaaaaaattt
aagtaaattccaaatataatagagaaacctttaacaacatcatatccggcttgttgaagt
agaccactcatatattcagaatctgaagtattatgagaacatccccacgtacggacccat
actttttgtccgacacccggaaccattgaatcaacgtttgcatcgtctggttgttgctct
tttggcacttgtttacgggttcgaattttaatctcatttgcatctctgctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAACTCGTTAAGCTTCTCGTTGA 252 55 338 Antisense
TTCTCGTTGATCGCTTCTGTTGGGA 263 691 353 Antisense
CTATTGCTAGAAGTTCCCAGCCTCG 231 223 393 Antisense
ACCTTTAACAACATCATATCCGGCT 76 85 724 Antisense
TCCGGCTTGTTGAAGTAGACCACTC 497 591 742 Antisense
TTATGAGAACATCCCCACGTACGGA 667 665 788 Antisense
CCGACACCCGGAACCATTGAATCAA 34 263 827 Antisense
CGTTTGCATCGTCTGGTTGTTGCTC 150 247 852 Antisense
GTTGTTGCTCTTTTGGCACTTGTTT 402 437 867 Antisense
TTGGCACTTGTTTACGGGTTCGAAT 390 705 879 Antisense
TTAATCTCATTTGCATCTCTGCTCC 163 685 905 Antisense
Sequence Source Affymetrix Proprietary Database