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[176640_s_at]

Description M116.1 /REP_DB=WormBase Gene ID /WP=CE21081 /GB=AAK71385.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 11      6grp_cgc > 38      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 10.5
(-2.4)
A 		20.9
(-1.7)
A 		2.4
(-3)
A 		87.5
(3)
P 		85
B 15.5
(-0.4)
A 		3.1
(-2.9)
A 		2.4
(-3)
A 		33.1
(3)
M 		31
C 3.1
(-2.7)
A 		16.1
(-0.8)
A 		1.4
(-3)
A 		41.8
(3)
P 		40
avr 9.7
(-2.1) 		13.4
(-1.7) 		2.1
(-3) 		54.1
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 41.9
(-0.6)
P 		1.4
(-3)
A 		21.7
(-1.8)
A 		14.1
(-2.2)
A 		15.2
(-2.2)
A 		102.5
(3)
P 		101
B 26.7
(-2.1)
A 		2.3
(-3)
A 		3
(-3)
A 		12.1
(-2.6)
A 		37
(-1.7)
A 		159.7
(3)
P 		157
C 31.5
(-2)
A 		19.9
(-2.4)
A 		1.4
(-3)
A 		48.8
(-1.4)
A 		16.2
(-2.5)
A 		184.4
(3)
P 		183
avr 33.4
(-1.9) 		7.9
(-3) 		8.7
(-3) 		25
(-2.3) 		22.8
(-2.4) 		148.9
(3) 		141
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.8
(-1.4)
A 		4.5
(-1.1)
A 		0.6
(-3)
A 		12.8
(3)
P 		12
B 5
(1.1)
A 		0.8
(-2.8)
A 		0.6
(-3)
A 		7
(3)
M 		6
C 1
(-2.5)
A 		4.6
(0.7)
A 		0.5
(-3)
A 		7.1
(3)
P 		7
avr 3.3
(-1.1) 		3.3
(-1.1) 		0.6
(-3) 		9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 7.7
(-1.2)
P 		0.5
(-3)
A 		4.7
(-2)
A 		3.6
(-2.2)
A 		4.6
(-2)
A 		25
(3)
P 		25
B 9.3
(-2.1)
A 		0.8
(-3)
A 		0.7
(-3)
A 		3.2
(-2.7)
A 		15
(-1.5)
A 		59.6
(3)
P 		59
C 11.7
(-1.9)
A 		6.1
(-2.4)
A 		0.4
(-3)
A 		9.8
(-2.1)
A 		5.2
(-2.5)
A 		61.7
(3)
P 		61
avr 9.6
(-2) 		2.5
(-2.9) 		1.9
(-3) 		5.5
(-2.5) 		8.3
(-2.2) 		48.8
(3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176640_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8981
Sequence Type Exemplar sequence
Representative Public ID M116.1 NCBI
Target Description M116.1 /REP_DB=WormBase Gene ID /WP=CE21081 /GB=AAK71385.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069029(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069029 NCBI Caenorhabditis elegans M116.4 (M116.4) mRNA, complete cds. 11/11 None
SNAP00000005095 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8405004:8405918:-1 11/11 None
SNAP00000005096 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8411235:8412149:1 11/11 None
M116.4 ENSEMBL cdna:known chromosome:CEL140:IV:8405004:8406593:-1 gene:M116.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069030 3/11 Cross Hyb Matching Probes None
M116.1 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8410565-8412155(+) 100.0 100.0
chrIV:8405009-8406599(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-25
Ensembl M116.4
Entrez Gene 177640 Entrez gene
SwissProt Q7KPW1 EMBL-EBI
WormBase CE21081 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71385 Hypothetical protein M116.4 [Caenorhabditis elegans] ref|NP_501430.1| M116.4 [Caenorhabditis elegans] 0.0
blast AAK71385 Hypothetical protein M116.4 [Caenorhabditis elegans] ref|NP_501430.1| M116.4 [Caenorhabditis elegans] 1.0E-171
blast AAO91704 Hypothetical protein R08C7.13 [Caenorhabditis elegans] ref|NP_001023331.1| R08C7.13 [Caenorhabditis elegans] 3.0E-40
blast T29660 hypothetical protein R08C7.9 - Caenorhabditis elegans 3.0E-40
blast AAB92037 Hypothetical protein E04A4.2 [Caenorhabditis elegans] ref|NP_500624.1| E04A4.2 [Caenorhabditis elegans] 4.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.1E-4
Sequence
Target Sequence 
>C. ELEGANS:176640_S_AT
gaagctttctttacacaacacgatacgttgcgagactatgaacattttcgaaatgtttgc
tggattggatattgaaactttccaaactattttttacggacattataagactagttttta
tgaaaaaacattaaaaatgtttgctcttcaatctgaagctattcgtttgaataaattgcc
attcaatgatcctaagcaaattcattcaattgcttgccaaaatcatcgctctgcaacaat
aagattaattactgatttattggcatttaatgatttattggcatttaatccgaaatcaca
aattatgagtgtttctttgacagatgtaaacctcttcttgaaacattggattcacggatc
caacagaagattagagttttctcgtttttatcatggacgtcctcattatagtaatgacga
ttgtcgtaaaataatcttcaagaatgtggattactgtattgcacccgtggaaagagaaat
gttgattcaagaacctggagagttggaaaaaagtgtcattggaggatttgatattgtatg
tatcgatggaagaaaggcatctatctttgtagatcagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTTTCTTTACACAACACGATA 490 341 378 Antisense
AACACGATACGTTGCGAGACTATGA 529 135 394 Antisense
AAATGTTTGCTCTTCAATCTGAAGC 205 121 512 Antisense
AATTGCCATTCAATGATCCTAAGCA 119 179 551 Antisense
GCAAATTCATTCAATTGCTTGCCAA 465 317 573 Antisense
TTGCTTGCCAAAATCATCGCTCTGC 242 703 587 Antisense
AAATCATCGCTCTGCAACAATAAGA 2 117 597 Antisense
GACAGATGTAAACCTCTTCTTGAAA 412 367 696 Antisense
GAGTTTTCTCGTTTTTATCATGGAC 629 397 751 Antisense
TATCATGGACGTCCTCATTATAGTA 503 659 766 Antisense
AGGCATCTATCTTTGTAGATCAGTC 85 53 932 Antisense
Sequence Source Affymetrix Proprietary Database