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[176639_at]

Description F23F12.11 /REP_DB=WormBase Gene ID /WP=CE17025 /GEN=srb-10 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 25      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 25.3
(-3)
A 		27.6
(-2.8)
A 		97
(3)
A 		73.2
(1)
M 		72
B 38.7
(2.5)
A 		41.7
(3)
A 		8.3
(-3)
A 		32.3
(1.3)
A 		33
C 39.7
(-0.7)
P 		59.9
(3)
M 		26.7
(-3)
A 		50.3
(1.3)
P 		33
avr 34.6
(-3) 		43.1
(-0.1) 		44
(0.3) 		51.9
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 58.6
(3)
A 		21.2
(-1.6)
A 		50
(1.9)
P 		26.7
(-0.9)
A 		38.5
(0.5)
A 		10
(-3)
A 		49
B 18.6
(-3)
A 		50
(0.6)
A 		70.5
(3)
P 		31.5
(-1.5)
A 		20.8
(-2.7)
A 		29.3
(-1.8)
A 		52
C 31.7
(0.8)
A 		25.2
(-0.6)
P 		42.1
(3)
A 		13.7
(-3)
A 		24.2
(-0.8)
A 		29.5
(0.3)
A 		28
avr 36.3
(-0.4) 		32.1
(-1.2) 		54.2
(3) 		24
(-2.8) 		27.8
(-2.1) 		22.9
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 9.2
(-2)
A 		6
(-3)
A 		25.4
(3)
A 		10.7
(-1.5)
M 		19
B 12.3
(3)
A 		10.3
(1.8)
A 		1.9
(-3)
A 		6.9
(-0.1)
A 		10
C 13.1
(0.2)
P 		17.2
(3)
M 		9.3
(-2.4)
A 		8.5
(-3)
P 		9
avr 11.5
(1.8) 		11.2
(1.3) 		12.2
(3) 		8.7
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 10.8
(2.5)
A 		7.5
(0.3)
A 		10.9
(2.5)
P 		6.8
(-0.1)
A 		11.6
(3)
A 		2.4
(-3)
A 		9
B 6.5
(-3)
A 		16.6
(2.7)
A 		17.1
(3)
P 		8.3
(-2)
A 		8.5
(-1.9)
A 		10.9
(-0.5)
A 		11
C 11.8
(3)
A 		7.7
(0.3)
P 		10.7
(2.3)
A 		2.8
(-3)
A 		7.8
(0.3)
A 		9.9
(1.7)
A 		9
avr 9.7
(0.2) 		10.6
(1) 		12.9
(3) 		6
(-3) 		9.3
(-0.1) 		7.7
(-1.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176639_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6775
Sequence Type Exemplar sequence
Representative Public ID F23F12.11 NCBI
Target Description F23F12.11 /REP_DB=WormBase Gene ID /WP=CE17025 /GEN=srb-10 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000039916 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6493488:6494138:1 10/11 None
F23F12.11 ENSEMBL cdna:known chromosome:CEL140:III:6493488:6494208:1 gene:F23F12.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6493486-6494207(+) 100.0 100.0
Public Domain and Genome References
Ensembl F23F12.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast P46501 Serpentine receptor class beta-10 (Protein srb-10) 1.0E-104
blast 2123261X chemosensory receptor 1.0E-97
blast P46501 Serpentine receptor class beta-10 (Protein srb-10) 1.0E-81
blast 2123261X chemosensory receptor 6.0E-81
blast NP_498430 Serpentine Receptor, class B (beta) family member (srb-11) [Caenorhabditis elegans] gb|AAA20612.2| Serpentine receptor, class b (beta) protein 11 [Caenorhabditis elegans] 6.0E-47
blast NP_498430 Serpentine Receptor, class B (beta) family member (srb-11) [Caenorhabditis elegans] gb|AAA20612.2| Serpentine receptor, class b (beta) protein 11 [Caenorhabditis elegans] 2.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 3.2E-13
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 2.5E-20
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 3.4E-37
Trans Membrane
ID Number Of Domains Domain Boundaries
F23F12.11 4 25-44,57-79,102-119,140-162
GENEFINDER00000039916 3 22-44,81-98,119-141
Sequence
Target Sequence 
>C. ELEGANS:176639_AT
cgacgcctgtaccaaggctgctaatttggcacttcatccattattcagagcatctaacat
ttatcaaatgattatttcatatctttcaattctcccattgttttattttttagctttcaa
attttccaaatcaagttttcatggaaatttgaaggttatattttattgctattttataac
attaattttattttcgacagtatatggagtaaccgcgacaattcaatttattcggccact
cactgctattaggagttgtgatctaatagttccttcacttcatcataagatcggaaatct
tcccatctgttttttagtaacactttccgcgtacttcccgttcacaattacagttgaaag
atattacgcaatgaacaaatctgaaaaatatgagaaaatgccaatcatattgggaccact
ttttgttttattcattgttattgtcaatttcggagtaatttttcaaatttacaaaaatga
aacgttttctcatggcgatgtagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACGCCTGTACCAAGGCTGCTAAT 43 251 27 Antisense
GGCACTTCATCCATTATTCAGAGCA 631 535 54 Antisense
ATTTCATATCTTTCAATTCTCCCAT 111 17 100 Antisense
GTATATGGAGTAACCGCGACAATTC 38 453 226 Antisense
GACAATTCAATTTATTCGGCCACTC 645 363 243 Antisense
TTCGGCCACTCACTGCTATTAGGAG 325 695 257 Antisense
GATCTAATAGTTCCTTCACTTCATC 484 419 286 Antisense
GAAATCTTCCCATCTGTTTTTTAGT 340 363 320 Antisense
CGTACTTCCCGTTCACAATTACAGT 399 245 356 Antisense
TGGGACCACTTTTTGTTTTATTCAT 668 553 437 Antisense
AAACGTTTTCTCATGGCGATGTAGC 134 127 506 Antisense
Sequence Source Affymetrix Proprietary Database