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[176637_s_at]

Description C06H5.6 /REP_DB=WormBase Gene ID /WP=CE25762 /GB=CAC35863.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 98      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 91      6grp_total > 96      4grp_total > 25      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 452
1 2 3 4 range
A 270.9
(-3)
P 		603.2
(2)
P 		401.1
(-1.1)
P 		672.5
(3)
P 		402
B 280.8
(-3)
P 		435.7
(-0.9)
P 		463.9
(-0.5)
P 		723.3
(3)
P 		443
C 334.6
(-3)
P 		416.2
(-1.4)
P 		402.3
(-1.7)
P 		647.6
(3)
P 		313
avr 295.4
(-3) 		485
(-0.1) 		422.4
(-1) 		681.1
(3) 		386

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 218.5
(-1.6)
P 		174.4
(-3)
P 		264.7
(-0.1)
P 		211.2
(-1.8)
P 		291.9
(0.8)
P 		362.1
(3)
P 		188
B 172.1
(-2.3)
P 		158.2
(-3)
P 		209.9
(-0.4)
P 		277.3
(3)
P 		261.1
(2.2)
P 		241.5
(1.2)
P 		119
C 241.9
(-0.8)
P 		167.2
(-3)
P 		171
(-2.9)
P 		240.8
(-0.8)
P 		328.5
(1.8)
P 		368.9
(3)
P 		202
avr 210.8
(-1.3) 		166.6
(-3) 		215.2
(-1.1) 		243.1
(-0.1) 		293.8
(1.8) 		324.2
(3) 		158
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 98.6
(-3)
P 		130.9
(3)
P 		104.9
(-1.8)
P 		98.4
(-3)
P 		33
B 89.5
(-3)
P 		107.6
(-1.3)
P 		107.5
(-1.3)
P 		154.1
(3)
P 		65
C 110.8
(-2.7)
P 		119.7
(-1)
P 		140.2
(3)
P 		109.2
(-3)
P 		31
avr 99.6
(-3) 		119.4
(2.7) 		117.5
(2.1) 		120.6
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 40.3
(-3)
P 		62
(-0.3)
P 		57.6
(-0.8)
P 		53.6
(-1.3)
P 		88.1
(3)
P 		88.2
(3)
P 		48
B 59.9
(-2)
P 		52.7
(-2.8)
P 		51
(-3)
P 		73.4
(-0.6)
P 		106.1
(3)
P 		90.1
(1.3)
P 		55
C 89.7
(0.5)
P 		51
(-2.4)
P 		43.5
(-3)
P 		48.4
(-2.6)
P 		106.3
(1.7)
P 		123.5
(3)
P 		80
avr 63.3
(-1.5) 		55.2
(-2.5) 		50.7
(-3) 		58.5
(-2.1) 		100.2
(3) 		100.6
(3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176637_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12707
Sequence Type Exemplar sequence
Representative Public ID C06H5.6 NCBI
Target Description C06H5.6 /REP_DB=WormBase Gene ID /WP=CE25762 /GB=CAC35863.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075108(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075108 NCBI Caenorhabditis elegans C06H5.6 (C06H5.6) mRNA, complete cds. 11/11 None
C06H5.6 ENSEMBL cdna:known chromosome:CEL140:V:17882420:17891544:-1 gene:C06H5.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016160 8/11 Cross Hyb Matching Probes None
GENEFINDER00000016172 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17882506-17891539(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06H5.6
Entrez Gene 180170 Entrez gene
SwissProt Q9BH94 EMBL-EBI
WormBase CE31876 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC35863 Hypothetical protein C06H5.6 [Caenorhabditis elegans] emb|CAB07163.3| Hypothetical protein C06H5.6 [Caenorhabditis elegans] ref|NP_507509.2| C06H5.6 [Caenorhabditis elegans] 0.0
blast CAE61708 Hypothetical protein CBG05657 [Caenorhabditis briggsae] 0.0
blast AAP68960 Hypothetical protein B0361.11 [Caenorhabditis elegans] ref|NP_001021124.1| B0361.11 [Caenorhabditis elegans] sp|Q7Z118|YMPB_CAEEL Hypothetical protein B0361.11 in chromosome III 7.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 2.0E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507509.2 8 43-65,141-163,168-190,205-227,232-251,291-313,320-342,407-425
C06H5.6 8 43-65,141-163,168-190,205-227,232-251,291-313,320-342,407-425
Sequence
Target Sequence 
>C. ELEGANS:176637_S_AT
gactattccgttcttttggttcacacccgagtcgttgcactggctgatgacaaagcagaa
tgatcggaagatcaaaaaaatcgtgatgagcggaacctactgggcactgtccctctactc
aacggaactttccgaagacgaaacgaccggctacttcctatcaggccttgttgagctccc
cgcaggcttcttgtctgtgttcctgctcatcgcgttcaaacggaaaactgtctcgttcta
ctcattggcctttaccgcggtgttcatgttatgtaccgtctatattccgatgcaaggaaa
ttataaaatgatcttcccgttgttggcaaaatccaccaattctattgtgtgggcgtctca
gccattgttgtattccgagacagcaatcaaccaggacgctcccgcaattctgatctcaat
aatgtcgatcgtcgccgcttttctggttcttctgcagccagagaccaagaacaagaagct
tcccgaagatctcgatcaattcgacgccggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTATTCCGTTCTTTTGGTTCACA 456 371 741 Antisense
TGATGAGCGGAACCTACTGGGCACT 194 567 824 Antisense
ACTTCCTATCAGGCCTTGTTGAGCT 653 103 893 Antisense
GCAGGCTTCTTGTCTGTGTTCCTGC 229 311 922 Antisense
ACGGAAAACTGTCTCGTTCTACTCA 232 1 960 Antisense
GTACCGTCTATATTCCGATGCAAGG 419 457 1013 Antisense
AAATGATCTTCCCGTTGTTGGCAAA 124 121 1046 Antisense
CGTCTCAGCCATTGTTGTATTCCGA 332 245 1094 Antisense
CAATAATGTCGATCGTCGCCGCTTT 645 179 1157 Antisense
CTGGTTCTTCTGCAGCCAGAGACCA 680 239 1183 Antisense
AGATCTCGATCAATTCGACGCCGGG 24 67 1227 Antisense
Sequence Source Affymetrix Proprietary Database