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[176636_s_at]

Description Y71G12B.FF_rc /REP_DB=WormBase Gene ID /WP=CE22909 /CHR=1 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster 6grp_total > 56      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 9.8
(-3)
A 		14.1
(-2.6)
A 		17.9
(-2.2)
A 		69.4
(3)
A 		60
B 9.2
(-3)
A 		11.1
(-1)
A 		14.8
(2.9)
A 		14.9
(3)
A 		6
C 65.2
(0.9)
A 		12.8
(-3)
A 		23
(-2.2)
A 		92.8
(3)
A 		80
avr 28.1
(-1) 		12.7
(-3) 		18.6
(-2.2) 		59
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 10.2
(-1.9)
A 		17.9
(-0.8)
A 		1.9
(-3)
A 		9.8
(-1.9)
A 		34.9
(1.6)
A 		45.3
(3)
A 		43
B 37.7
(1.3)
A 		46.5
(3)
A 		25.7
(-1.1)
A 		32.6
(0.3)
A 		15.7
(-3)
A 		26.8
(-0.8)
A 		31
C 8.3
(-2.4)
A 		7.8
(-2.5)
A 		37.7
(3)
A 		20
(-0.2)
A 		4.8
(-3)
A 		14.2
(-1.3)
A 		33
avr 18.7
(-2.9) 		24.1
(0.3) 		21.8
(-1.1) 		20.8
(-1.7) 		18.5
(-3) 		28.8
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 3.6
(-2.6)
A 		3.1
(-3)
A 		4.7
(-1.6)
A 		10.2
(3)
A 		7
B 2.9
(-1.3)
A 		2.7
(-3)
A 		3.4
(3)
A 		3.2
(1.3)
A 		1
C 21.6
(3)
A 		3.7
(-3)
A 		8
(-1.6)
A 		15.6
(1)
A 		18
avr 9.4
(2.7) 		3.2
(-3) 		5.4
(-1) 		9.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.9
(-2.2)
A 		6.4
(0.4)
A 		0.4
(-3)
A 		2.5
(-1.8)
A 		10.5
(2.7)
A 		11
(3)
A 		11
B 13.1
(1.5)
A 		15.5
(3)
A 		6.2
(-3)
A 		8.6
(-1.5)
A 		6.4
(-2.9)
A 		10
(-0.5)
A 		9
C 3.1
(-1.8)
A 		2.4
(-2.3)
A 		9.6
(3)
A 		4
(-1.1)
A 		1.5
(-3)
A 		4.7
(-0.6)
A 		8
avr 6
(-1.3) 		8.1
(2.2) 		5.4
(-2.3) 		5
(-3) 		6.1
(-1.2) 		8.6
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176636_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28172
Sequence Type Exemplar sequence
Representative Public ID Y71G12B.FF NCBI
Target Description Y71G12B.FF_rc /REP_DB=WormBase Gene ID /WP=CE22909 /CHR=1 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y71G12B.FF
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y71G12B.FF Y71G12B.FF_rc /REP_DB=WormBase Gene ID /WP=CE22909 /CHR=1 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058498 11/11 Negative Strand Matching Probes A 
SNAP00000001800 11/11 Negative Strand Matching Probes None
GENEFINDER00000001820 11/11 Negative Strand Matching Probes None
Y71G12B.3 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1812955-1813538(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176636_S_AT
aagacggcacactgtgacagcctgagcgccgtgcgccggcggtggcttactttcgattgc
gccgccgccggcgccgcttgcggcgcacactgggcgccaacttcgaaaactcacgatctt
gttcttcaacttcttgactttcgccttattgactcttggcttcttggatggcgatggatc
cgactcgggcaactcctgaactccatcaccagttgccacttttgctgctccatcatccga
aataagtgcatcgtgagcaactgtctccggcggcggtggtggtggcacttcatttcctcc
gactggcggcgcatttggatccagattcgcgtagtcaaatgcaccgagattgtgatactc
atcgccaccggatttcagcggatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACGGCACACTGTGACAGCCTGA 177 153 124 Antisense
GGGCGCCAACTTCGAAAACTCACGA 19 489 215 Antisense
AAACTCACGATCTTGTTCTTCAACT 78 129 230 Antisense
TGTTCTTCAACTTCTTGACTTTCGC 251 561 243 Antisense
GACTTTCGCCTTATTGACTCTTGGC 238 373 259 Antisense
GACTCTTGGCTTCTTGGATGGCGAT 196 373 274 Antisense
TGCTGCTCCATCATCCGAAATAAGT 141 583 346 Antisense
TCCGACTGGCGGCGCATTTGGATCC 346 591 421 Antisense
TTTGGATCCAGATTCGCGTAGTCAA 650 651 437 Antisense
GAGATTGTGATACTCATCGCCACCG 308 397 469 Antisense
ATCGCCACCGGATTTCAGCGGATCA 256 37 484 Antisense
Sequence Source Affymetrix Proprietary Database