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[176635_s_at]

Description R119.1 /REP_DB=WormBase Gene ID /WP=CE25971 /GB=AAC16430.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 02      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 10.1
(-3)
A 		40.9
(-1.2)
A 		44.7
(-1)
P 		113.6
(3)
P 		104
B 38
(0)
A 		5.6
(-2.8)
A 		3.9
(-3)
A 		71.5
(3)
M 		68
C 19.9
(-2.2)
A 		23.2
(-2.1)
A 		4.8
(-3)
A 		122.9
(3)
P 		118
avr 22.7
(-2.7) 		23.2
(-2.6) 		17.8
(-3) 		102.7
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 38
(0.5)
A 		18.5
(-1.6)
A 		19.4
(-1.5)
A 		6.2
(-3)
A 		60
(3)
P 		49.8
(1.9)
A 		54
B 28.2
(-2.3)
A 		24.5
(-3)
A 		40.4
(-0)
P 		54.5
(2.6)
A 		45.9
(1)
M 		56.6
(3)
P 		32
C 14.6
(-2.1)
A 		38.6
(0.3)
A 		27.7
(-0.8)
A 		5.9
(-3)
A 		48.2
(1.3)
A 		65.4
(3)
P 		60
avr 26.9
(-2.2) 		27.2
(-2.1) 		29.2
(-1.8) 		22.2
(-3) 		51.4
(2) 		57.3
(3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 3.7
(-3)
A 		8.9
(-0.6)
A 		11.7
(0.7)
P 		16.6
(3)
P 		13
B 12.1
(1.7)
A 		1.4
(-2.8)
A 		0.9
(-3)
A 		15.2
(3)
M 		14
C 6.6
(-1.5)
A 		6.7
(-1.4)
A 		1.7
(-3)
A 		20.7
(3)
P 		19
avr 7.5
(-1.7) 		5.7
(-2.6) 		4.8
(-3) 		17.5
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 7
(-1)
A 		6.6
(-1.2)
A 		4.2
(-2.1)
A 		1.6
(-3)
A 		18.1
(3)
P 		12.1
(0.8)
A 		17
B 9.8
(-2.3)
A 		8.2
(-3)
A 		9.8
(-2.3)
P 		14.4
(-0.1)
A 		18.6
(1.8)
M 		21.1
(3)
P 		13
C 5.4
(-1.8)
A 		11.8
(0.1)
A 		7
(-1.3)
A 		1.2
(-3)
A 		15.6
(1.2)
A 		21.9
(3)
P 		21
avr 7.4
(-2.2) 		8.9
(-1.5) 		7
(-2.4) 		5.7
(-3) 		17.4
(2.5) 		18.4
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176635_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2567
Sequence Type Exemplar sequence
Representative Public ID R119.1 NCBI
Target Description R119.1 /REP_DB=WormBase Gene ID /WP=CE25971 /GB=AAC16430.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058322(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058322 NCBI Caenorhabditis elegans R119.1 (R119.1) mRNA, complete cds. 11/11 None
GENEFINDER00000007621 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:357251:363904:-1 11/11 None
SNAP00000007608 ENSEMBL cdna:SNAP chromosome:CEL140:I:358294:358814:-1 9/11 None
R119.1 ENSEMBL cdna:known chromosome:CEL140:I:357239:363904:-1 gene:R119.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:357242-363904(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R119.1
Entrez Gene 171626 Entrez gene
SwissProt O61712 EMBL-EBI
WormBase CE25971 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC16430 Hypothetical protein R119.1 [Caenorhabditis elegans] ref|NP_490723.1| R119.1 [Caenorhabditis elegans] 0.0
blast AAC16430 Hypothetical protein R119.1 [Caenorhabditis elegans] ref|NP_490723.1| R119.1 [Caenorhabditis elegans] 1.0E-163
blast AAC16430 Hypothetical protein R119.1 [Caenorhabditis elegans] ref|NP_490723.1| R119.1 [Caenorhabditis elegans] 8.0E-88
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490723.1 1 703-725
R119.1 1 703-725
GENEFINDER00000007621 1 664-686
Sequence
Target Sequence 
>C. ELEGANS:176635_S_AT
acgactggcttcaaaagcggagctggagccgaaactgacgagcttcgaagtgattggaac
gatatttatcagaatttcaatagatttctcgacaacctcgtgccactggaatatcgatta
tattctccgccgaaacgagagaatttaacagatcatgtcaagacgattagcatgattatt
acaatgaaaaaaccaaattttaaagttaaatcaattacggatctattgaacactccgtat
tctctccaccagcatgatattggaaatttgaatcggcttcagcaattttcggaggaatac
gatggaaatatcgggaaattgattgcgatgagctcggttcttatgaaaatgaacaattgg
ttcgaaaaaattcgggaaacgagtgttggagaggagaatctggatccaatggattactgt
acttgtcaggaggatgaaattctcccggaagacccttgcttcaaagtctgcgatataacc
gaagagctgaaaatgatccagcaacaaaaaaatgggaaaaagctatggatttttgagaaa
atacccacgtggcaactcggaattctctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGACTGGCTTCAAAAGCGGAGCTG 281 91 1576 Antisense
GCTGGAGCCGAAACTGACGAGCTTC 321 295 1597 Antisense
AATAGATTTCTCGACAACCTCGTGC 615 171 1654 Antisense
GACAACCTCGTGCCACTGGAATATC 559 365 1666 Antisense
ATCGATTATATTCTCCGCCGAAACG 377 31 1688 Antisense
CTATTGAACACTCCGTATTCTCTCC 89 225 1798 Antisense
ATTCTCTCCACCAGCATGATATTGG 308 11 1814 Antisense
ATCGGCTTCAGCAATTTTCGGAGGA 246 35 1847 Antisense
GATGAGCTCGGTTCTTATGAAAATG 541 411 1902 Antisense
GACCCTTGCTTCAAAGTCTGCGATA 493 381 2026 Antisense
CACGTGGCAACTCGGAATTCTCTCG 492 199 2121 Antisense
Sequence Source Affymetrix Proprietary Database