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[176634_s_at]

Description R07B7.3 /REP_DB=WormBase Gene ID /WP=CE06265 /GB=CAB00112.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 44      4grp_highest_8_8 > 54      4grp_high_8_8 > 18      6grp_highest_nonorm > 57      6grp_total > 10      4grp_total > 22      6grp_cgc > 65      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 666
1 2 3 4 range
A 2629.5
(0)
P 		2817.9
(3)
P 		2436.3
(-3)
P 		2718.3
(1.4)
P 		382
B 2797.2
(2.3)
P 		2509.6
(-1.5)
P 		2392
(-3)
P 		2849.4
(3)
P 		457
C 2724
(3)
P 		2183
(-3)
P 		2210.7
(-2.7)
P 		2606.2
(1.7)
P 		541
avr 2716.9
(2.9) 		2503.5
(-0.5) 		2346.3
(-3) 		2724.6
(3) 		378

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1112
1 2 3 4 5 6 range
A 2197
(-2.4)
P 		3192.4
(3)
P 		2080.5
(-3)
P 		2527.3
(-0.6)
P 		2440.9
(-1.1)
P 		3096.8
(2.5)
P 		1112
B 2161
(-3)
P 		2552.8
(1.7)
P 		2664.5
(3)
P 		2587.2
(2.1)
P 		2191.5
(-2.6)
P 		2328.2
(-1)
P 		504
C 2529.2
(-0.9)
P 		2602.8
(-0.3)
P 		2832.6
(1.6)
P 		3005.4
(3)
P 		2265.9
(-3)
P 		2457.3
(-1.4)
P 		740
avr 2295.7
(-3) 		2782.7
(3) 		2525.9
(-0.2) 		2706.6
(2.1) 		2299.4
(-3) 		2627.4
(1.1) 		487
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 560
1 2 3 4 range
A 957.4
(3)
P 		611.7
(-0.7)
P 		636.9
(-0.4)
P 		397.9
(-3)
P 		560
B 892
(3)
P 		619.8
(-1.8)
P 		554.3
(-3)
P 		607.2
(-2.1)
P 		338
C 901.7
(3)
P 		627.6
(-0.6)
P 		770.5
(1.3)
P 		439.4
(-3)
P 		462
avr 917
(3) 		619.7
(-1.1) 		653.9
(-0.6) 		481.5
(-3) 		436

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 730
1 2 3 4 5 6 range
A 405
(-3)
P 		1135.4
(3)
P 		453.1
(-2.6)
P 		641
(-1.1)
P 		736.5
(-0.3)
P 		754
(-0.1)
P 		730
B 751.9
(-0.4)
P 		849.7
(2)
P 		647
(-3)
P 		685.3
(-2.1)
P 		890.4
(3)
P 		868.2
(2.5)
P 		243
C 937.5
(3)
P 		794.2
(0.4)
P 		721
(-0.9)
P 		604.4
(-3)
P 		733.2
(-0.7)
P 		822.6
(0.9)
P 		333
avr 698.1
(-1.3) 		926.4
(3) 		607
(-3) 		643.6
(-2.3) 		786.7
(0.4) 		814.9
(0.9) 		319
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176634_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14047
Sequence Type Exemplar sequence
Representative Public ID R07B7.3 NCBI
Target Description R07B7.3 /REP_DB=WormBase Gene ID /WP=CE06265 /GB=CAB00112.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073622(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073622 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-53) (pqn-53) mRNA, complete cds. 11/11 None
SNAP00000027083 ENSEMBL cdna:SNAP chromosome:CEL140:V:12066189:12067185:-1 11/11 None
GENEFINDER00000027106 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12066189:12067929:-1 11/11 None
R07B7.3.1 ENSEMBL cdna:known chromosome:CEL140:V:12066030:12067979:-1 gene:R07B7.3 11/11 A 
R07B7.3.2 ENSEMBL cdna:known chromosome:CEL140:V:12066030:12067980:-1 gene:R07B7.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12066188-12067929(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-53
Ensembl R07B7.3
Entrez Gene 179656 Entrez gene
SwissProt Q21793 EMBL-EBI
WormBase CE06265 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00112 Hypothetical protein R07B7.3 [Caenorhabditis elegans] ref|NP_506023.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-53) [Caenorhabditis elegans] 6.0E-95
blast CAE75379 Hypothetical protein CBG23366 [Caenorhabditis briggsae] 1.0E-37
blast CAB00112 Hypothetical protein R07B7.3 [Caenorhabditis elegans] ref|NP_506023.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-53) [Caenorhabditis elegans] 2.0E-35
Sequence
Target Sequence 
>C. ELEGANS:176634_S_AT
gctgcccaagtgattcaacctgtgagaacaatcatccaacagagaccaataacggctcct
gttcgtactatcgtacagcatgttcgtcaagctccagtcaaagttgttcgccaaatcatc
actgctcctgtgcaatctcaagtgattcgtagagcaccgcaacaacaagttcgtcagaac
cgtccacagcagagacgcaatgtgattattcaatcacagcaatcgagaagattccgtcca
acaaacaacaacaataataatcgtccaacagtcattcgtcgtcaagtcgttcaacaagtt
ccaagacgcgctcaagttcaaagaccacagtatgagcaggtcgtgcaaagagtaatccag
actccagtggctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGCCCAAGTGATTCAACCTGTGA 635 295 454 Antisense
AATAACGGCTCCTGTTCGTACTATC 573 169 501 Antisense
GTACAGCATGTTCGTCAAGCTCCAG 252 461 526 Antisense
AGTTGTTCGCCAAATCATCACTGCT 311 63 555 Antisense
ACTGCTCCTGTGCAATCTCAAGTGA 256 99 574 Antisense
GAGCACCGCAACAACAAGTTCGTCA 353 389 605 Antisense
ATAATCGTCCAACAGTCATTCGTCG 232 25 710 Antisense
ATTCGTCGTCAAGTCGTTCAACAAG 343 7 727 Antisense
GTTCAACAAGTTCCAAGACGCGCTC 279 445 742 Antisense
GACGCGCTCAAGTTCAAAGACCACA 449 381 758 Antisense
GAGTAATCCAGACTCCAGTGGCTCA 674 399 803 Antisense
Sequence Source Affymetrix Proprietary Database