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[176630_s_at]

Description Y73B3A.S_rc /REP_DB=WormBase Gene ID /WP=CE26579 /CHR=X /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster 6grp_total > 94      4grp_total > 10      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 1
(-3)
A 		26.3
(1.8)
A 		1.9
(-2.8)
A 		32.4
(3)
A 		31
B 2.9
(-2.8)
A 		1.8
(-3)
A 		1.8
(-3)
A 		39
(3)
A 		37
C 5.1
(-2.9)
A 		5.6
(-2.9)
A 		3.1
(-3)
A 		112.9
(3)
M 		110
avr 3
(-2.9) 		11.2
(-2.1) 		2.3
(-3) 		61.4
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 1.4
(-3)
A 		1.1
(-3)
A 		4.4
(-2.5)
A 		1.8
(-2.9)
A 		39.6
(3)
A 		3.5
(-2.6)
A 		39
B 4.1
(-2.1)
A 		7.3
(-1)
A 		2.5
(-2.6)
A 		17.4
(2.3)
A 		1.2
(-3)
A 		19.7
(3)
A 		19
C 1.5
(-2.6)
A 		4.5
(-0.8)
A 		11
(3)
A 		4.5
(-0.8)
A 		0.8
(-3)
A 		1.5
(-2.6)
A 		10
avr 2.3
(-3) 		4.3
(-2) 		6
(-1.1) 		7.9
(-0.1) 		13.9
(3) 		8.2
(0.1) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 0.4
(-3)
A 		5.7
(3)
A 		0.5
(-2.9)
A 		4.7
(1.9)
A 		5
B 0.9
(-2.6)
A 		0.4
(-3)
A 		0.4
(-3)
A 		8.3
(3)
A 		8
C 1.7
(-2.8)
A 		1.6
(-2.8)
A 		1.1
(-3)
A 		19
(3)
M 		18
avr 1
(-2.8) 		2.6
(-1.9) 		0.7
(-3) 		10.7
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.4
(-2.9)
A 		1
(-2.6)
A 		0.5
(-2.9)
A 		11.9
(3)
A 		0.9
(-2.7)
A 		12
B 1.4
(-2.2)
A 		2.4
(-1.3)
A 		0.6
(-2.9)
A 		4.6
(0.6)
A 		0.5
(-3)
A 		7.3
(3)
A 		7
C 0.6
(-2.1)
A 		1.4
(-0.2)
A 		2.8
(3)
A 		0.9
(-1.4)
A 		0.2
(-3)
A 		0.5
(-2.3)
A 		3
avr 0.8
(-3) 		1.4
(-1.9) 		1.5
(-1.8) 		2
(-0.9) 		4.2
(3) 		2.9
(0.7) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176630_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28205
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.S NCBI
Target Description Y73B3A.S_rc /REP_DB=WormBase Gene ID /WP=CE26579 /CHR=X /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075666
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000022316 ENSEMBL cdna:SNAP chromosome:CEL140:X:137029:137336:-1 None
GENEFINDER00000022343 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:137029:138118:-1 None
Y73B3A.7 ENSEMBL cdna:known chromosome:CEL140:X:135793:138075:-1 gene:Y73B3A.7 A 
NM_075666 NCBI Caenorhabditis elegans Y73B3A.7 (Y73B3A.7) mRNA, complete cds. A 
SNAP00000022315 ENSEMBL cdna:SNAP chromosome:CEL140:X:135754:136061:1 None
SNAP00000022316 ENSEMBL cdna:SNAP chromosome:CEL140:X:137029:137336:-1 None
GENEFINDER00000022343 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:137029:138118:-1 None
Y73B3A.7 ENSEMBL cdna:known chromosome:CEL140:X:135793:138075:-1 gene:Y73B3A.7 A 
NM_075666 NCBI Caenorhabditis elegans Y73B3A.7 (Y73B3A.7) mRNA, complete cds. A 
GENEFINDER00000022342 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:134972:136262:1 None
SNAP00000022315 ENSEMBL cdna:SNAP chromosome:CEL140:X:135754:136061:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:135792-138075(+) 95.47 100.0
chrX:135014-137297(-) 95.47 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73B3A.7
Entrez Gene 190625 Entrez gene
SwissProt Q95XF5 EMBL-EBI
WormBase CE26579 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39357 Hypothetical protein Y73B3A.7 [Caenorhabditis elegans] ref|NP_508067.1| Y73B3A.7 [Caenorhabditis elegans] 1.0E-106
blast AAK39357 Hypothetical protein Y73B3A.7 [Caenorhabditis elegans] ref|NP_508067.1| Y73B3A.7 [Caenorhabditis elegans] 4.0E-28
blast AAK39357 Hypothetical protein Y73B3A.7 [Caenorhabditis elegans] ref|NP_508067.1| Y73B3A.7 [Caenorhabditis elegans] 5.0E-28
blast AAK39357 Hypothetical protein Y73B3A.7 [Caenorhabditis elegans] ref|NP_508067.1| Y73B3A.7 [Caenorhabditis elegans] 6.0E-23
Sequence
Target Sequence 
>C. ELEGANS:176630_S_AT
ctggtacgtcagcaagcaacacattgaatcacacgactgagaattcaacgtggccagttt
gtccttttttaaatccttaggtgtcatgaatctttcatacatggactccattatacgatt
ttgtcctttgacgatggcggcccaaatcctatcactcttcgaaccatttttgaaaagtgc
atcgatggcggtctcgtcaatatgaagtcggcctccgagagcttgagcgacgtttttcgt
attcaaagggagacgagacgaagttggattattcgtgcttttcaattgctggtcagtctt
cctttttcctcgataacccattattgattttcttaccatctggattctccggagctgagg
agccatgatcatctgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGTACGTCAGCAAGCAACACATT 40 215 157 Antisense
GCAACACATTGAATCACACGACTGA 518 319 172 Antisense
AATTCAACGTGGCCAGTTTGTCCTT 693 175 198 Antisense
AATCCTTAGGTGTCATGAATCTTTC 288 167 228 Antisense
GAATCTTTCATACATGGACTCCATT 193 329 244 Antisense
GAGCGACGTTTTTCGTATTCAAAGG 355 383 381 Antisense
TTCGTGCTTTTCAATTGCTGGTCAG 608 695 428 Antisense
CAATTGCTGGTCAGTCTTCCTTTTT 517 179 439 Antisense
CTTTTTCCTCGATAACCCATTATTG 130 219 458 Antisense
TTCTTACCATCTGGATTCTCCGGAG 155 691 486 Antisense
GCTGAGGAGCCATGATCATCTGCAT 261 295 510 Antisense
Sequence Source Affymetrix Proprietary Database