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[176629_s_at]

Description Y50D4C.H_rc /REP_DB=WormBase Gene ID /WP=CE26548 /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster 6grp_total > 09      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 60.6
(3)
A 		14.9
(-1.8)
A 		12.2
(-2.1)
A 		4
(-3)
A 		57
B 16.9
(-0.9)
A 		21.9
(0.2)
A 		7.4
(-3)
A 		34.6
(3)
A 		27
C 27.2
(-0.7)
A 		45.4
(3)
A 		15.6
(-3)
A 		31.6
(0.2)
A 		30
avr 34.9
(3) 		27.4
(1.1) 		11.7
(-3) 		23.4
(0) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 69
(3)
A 		32.2
(-0.6)
A 		32.7
(-0.6)
A 		54.5
(1.6)
A 		7.8
(-3)
A 		32.5
(-0.6)
A 		61
B 46.4
(3)
A 		11.8
(-3)
A 		37.6
(1.5)
A 		20.6
(-1.5)
A 		31.6
(0.4)
A 		40.8
(2)
A 		35
C 41.1
(1.3)
A 		16.1
(-3)
A 		28.9
(-0.8)
A 		50.2
(2.9)
A 		40.2
(1.2)
A 		50.9
(3)
A 		35
avr 52.2
(3) 		20
(-3) 		33.1
(-0.6) 		41.8
(1.1) 		26.5
(-1.8) 		41.4
(1) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 22.1
(3)
A 		3.2
(-2.3)
A 		3.2
(-2.3)
A 		0.6
(-3)
A 		22
B 5.4
(0.9)
A 		5.4
(0.9)
A 		1.7
(-3)
A 		7.4
(3)
A 		6
C 9
(-0.1)
A 		13
(3)
A 		5.5
(-2.8)
A 		5.3
(-3)
A 		8
avr 12.2
(3) 		7.2
(-0.4) 		3.5
(-3) 		4.4
(-2.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 12.7
(2.4)
A 		11.4
(1.7)
A 		7.1
(-0.5)
A 		13.8
(3)
A 		2.4
(-3)
A 		7.9
(-0.1)
A 		11
B 16.1
(3)
A 		3.9
(-3)
A 		9.1
(-0.4)
A 		5.5
(-2.2)
A 		12.8
(1.4)
A 		15.2
(2.6)
A 		12
C 15.2
(2.1)
A 		4.9
(-3)
A 		7.4
(-1.8)
A 		10.1
(-0.4)
A 		13
(1)
A 		17
(3)
A 		12
avr 14.7
(3) 		6.7
(-3) 		7.9
(-2.1) 		9.8
(-0.7) 		9.4
(-1) 		13.4
(2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176629_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28204
Sequence Type Exemplar sequence
Representative Public ID Y50D4C.H NCBI
Target Description Y50D4C.H_rc /REP_DB=WormBase Gene ID /WP=CE26548 /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070957(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070957 NCBI Caenorhabditis elegans Y50D4C.3 (Y50D4C.3) mRNA, complete cds. 11/11 A 
GENEFINDER00000044742 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:939473:945074:-1 11/11 None
Y50D4C.3 ENSEMBL cdna:known chromosome:CEL140:V:939328:945074:-1 gene:Y50D4C.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:940586-940796(-) 90.48 100.0
Public Domain and Genome References
Gene Title
Ensembl Y50D4C.3
Entrez Gene 178599 Entrez gene
SwissProt Q965Q9 EMBL-EBI
WormBase CE26547 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1624483_AT dm
DROSGENOME1:148768_AT dm
CHICKEN:GGA.9367.1.S1_AT tudor domain containing 3 gga
CHICKEN:GGA.9367.2.S1_S_AT tudor domain containing 3 gga
HG-U133_PLUS_2:214028_X_AT tudor domain containing 3 hs
HG-U133A_2:214028_X_AT tudor domain containing 3 hs
HG-U133A:214028_X_AT tudor domain containing 3 hs
HG-U133_PLUS_2:208089_S_AT tudor domain containing 3 hs
HG-U133A:208089_S_AT tudor domain containing 3 hs
HG-U133A_2:208089_S_AT tudor domain containing 3 hs
HU35KSUBA:RC_AA194881_AT tudor domain containing 3 hs
HU35KSUBA:AA406087_S_AT tudor domain containing 3 hs
U133_X3P:G13540575_3P_S_AT tudor domain containing 3 hs
U133_X3P:HS2.382838.1.S1_3P_S_AT tudor domain containing 3 hs
U133_X3P:HS2.382838.1.S1_3P_AT tudor domain containing 3 hs
U133_X3P:HS.1975.0.A1_3P_X_AT tudor domain containing 3 hs
U133_X3P:HS.1975.0.A1_3P_AT tudor domain containing 3 hs
U133_X3P:214028_3P_X_AT tudor domain containing 3 hs
U133_X3P:1569069_3P_S_AT tudor domain containing 3 hs
HG-U133_PLUS_2:1569069_S_AT tudor domain containing 3 hs
HG-U95AV2:32768_AT tudor domain containing 3 hs
HG-U95B:42423_AT Tudor domain containing 3 hs
HG-U95C:56101_AT Tudor domain containing 3 hs
HG-U95D:70585_R_AT Tudor domain containing 3 hs
HG-U95D:70586_AT Tudor domain containing 3 hs
HU35KSUBB:RC_H40098_AT Tudor domain containing 3 hs
HU35KSUBD:RC_AA609438_AT Tudor domain containing 3 hs
HU35KSUBD:RC_H28738_AT Tudor domain containing 3 hs
MOUSE430_2:1451545_AT tudor domain containing 3 mm
MOUSE430A_2:1451545_AT tudor domain containing 3 mm
MOE430A:1451545_AT tudor domain containing 3 mm
MG-U74CV2:129131_AT tudor domain containing 3 mm
MG-U74CV2:129464_AT tudor domain containing 3 mm
MG-U74CV2:165706_R_AT tudor domain containing 3 mm
MOE430B:1434869_AT tudor domain containing 3 mm
MOUSE430_2:1434869_AT tudor domain containing 3 mm
MOE430B:1441496_AT tudor domain containing 3 mm
MOUSE430_2:1441496_AT tudor domain containing 3 mm
MG-U74BV2:115585_AT Tudor domain containing 3, mRNA (cDNA clone MGC:11761 IMAGE:3153274) mm
MOE430B:1459249_AT Tudor domain containing 3, mRNA (cDNA clone MGC:11761 IMAGE:3153274) mm
MOUSE430_2:1459249_AT Tudor domain containing 3, mRNA (cDNA clone MGC:11761 IMAGE:3153274) mm
RG-U34B:RC_AI058808_AT tudor domain containing 3 (predicted) rn
RAE230A:1398401_AT tudor domain containing 3 (predicted) rn
RAT230_2:1398401_AT tudor domain containing 3 (predicted) rn
RAE230B:1393695_AT Tudor domain containing 3 (predicted) rn
RAT230_2:1393695_AT Tudor domain containing 3 (predicted) rn
RG-U34B:RC_AI059810_AT Tudor domain containing 3 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68508 Hypothetical protein Y50D4C.3 [Caenorhabditis elegans] ref|NP_503358.1| Y50D4C.3 [Caenorhabditis elegans] 0.0
blast CAE71039 Hypothetical protein CBG17880 [Caenorhabditis briggsae] 1.0E-145
blast NP_001025993 tudor domain containing 3 [Gallus gallus] emb|CAG30967.1| hypothetical protein [Gallus gallus] 1.0E-26
Sequence
Target Sequence 
>C. ELEGANS:176629_S_AT
aaaattcgaatcaagggcatccacgtggaaatcagaagagtttccagcaaggagcgcctc
atcagacgccacgtggaaatcaagggaacttccagcaacaaggcccgccacgtggcaccg
gaaactatttcttccagcagggacctccacgtggcggccaatttcacggaggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATTCGAATCAAGGGCATCCACG 451 131 19 Antisense
TTCGAATCAAGGGCATCCACGTGGA 539 687 23 Antisense
GAATCAAGGGCATCCACGTGGAAAT 229 327 26 Antisense
AAGAGTTTCCAGCAAGGAGCGCCTC 629 149 54 Antisense
GGAAATCAAGGGAACTTCCAGCAAC 318 527 93 Antisense
CAAGGGAACTTCCAGCAACAAGGCC 618 181 99 Antisense
CCACGTGGCACCGGAAACTATTTCT 583 273 126 Antisense
GGCACCGGAAACTATTTCTTCCAGC 464 535 132 Antisense
AAACTATTTCTTCCAGCAGGGACCT 39 129 140 Antisense
TCCACGTGGCGGCCAATTTCACGGA 602 587 164 Antisense
CGTGGCGGCCAATTTCACGGAGGAT 449 243 168 Antisense
Sequence Source Affymetrix Proprietary Database