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[176624_at]

Description W03A3.1 /REP_DB=WormBase Gene ID /WP=CE07563 /GEN=ceh-10 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 25      4grp_high_8_8 > 02      6grp_total > 25      4grp_total > 14      6grp_cgc > 23      6grp_high1_sub > 01_02      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 157.7
(2.9)
P 		135.6
(1.1)
P 		85.6
(-3)
M 		159.2
(3)
P 		74
B 176
(0.7)
P 		138
(-1.6)
P 		115.5
(-3)
P 		213.8
(3)
P 		98
C 191.3
(1.1)
P 		55.7
(-3)
P 		112.3
(-1.3)
P 		253.1
(3)
P 		197
avr 175
(1.1) 		109.8
(-2.7) 		104.5
(-3) 		208.7
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 215.3
(3)
P 		173.4
(1.5)
P 		101.4
(-1.2)
P 		90.4
(-1.6)
P 		52.2
(-3)
P 		86.5
(-1.7)
P 		163
B 202.4
(3)
P 		200.6
(2.9)
P 		123.1
(-1.2)
P 		147.6
(0.1)
P 		101.1
(-2.4)
P 		90.2
(-3)
P 		112
C 214.9
(3)
P 		202.4
(2.5)
P 		111.6
(-0.8)
P 		108.9
(-0.9)
A 		50.4
(-3)
P 		89.9
(-1.6)
P 		165
avr 210.9
(3) 		192.1
(2.2) 		112
(-1.1) 		115.6
(-1) 		67.9
(-3) 		88.9
(-2.1) 		143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 57.4
(3)
P 		29.4
(-1.8)
P 		22.4
(-3)
M 		23.3
(-2.8)
P 		35
B 56.1
(3)
P 		34.1
(-1.5)
P 		26.8
(-3)
P 		45.6
(0.8)
P 		29
C 63.3
(3)
P 		16
(-3)
P 		39.1
(-0.1)
P 		42.7
(0.4)
P 		47
avr 58.9
(3) 		26.5
(-3) 		29.4
(-2.5) 		37.2
(-1) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 39.7
(0.1)
P 		61.7
(3)
P 		22.1
(-2.2)
P 		22.9
(-2.1)
P 		15.8
(-3)
P 		21.1
(-2.3)
P 		46
B 70.4
(3)
P 		66.8
(2.5)
P 		29.9
(-3)
P 		39.1
(-1.6)
P 		41.1
(-1.3)
P 		33.7
(-2.4)
P 		41
C 79.7
(3)
P 		61.8
(1.3)
P 		28.4
(-1.9)
P 		21.9
(-2.5)
A 		16.3
(-3)
P 		30.1
(-1.7)
P 		63
avr 63.3
(3) 		63.4
(3) 		26.8
(-2.6) 		28
(-2.4) 		24.4
(-3) 		28.3
(-2.4) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176624_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6260
Sequence Type Exemplar sequence
Representative Public ID W03A3.1 NCBI
Target Description W03A3.1 /REP_DB=WormBase Gene ID /WP=CE07563 /GEN=ceh-10 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065850(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065850 NCBI Caenorhabditis elegans C.Elegans Homeobox family member (ceh-10) (ceh-10) mRNA, complete cds. 11/11 None
SNAP00000017288 ENSEMBL cdna:SNAP chromosome:CEL140:III:5799022:5800994:1 11/11 None
GENEFINDER00000017290 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5799022:5800998:1 11/11 None
W03A3.1 ENSEMBL cdna:known chromosome:CEL140:III:5799022:5800998:1 gene:W03A3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5799020-5800997(+) 97.2 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ceh-10
Ensembl W03A3.1
Entrez Gene 175811 Entrez gene
SwissProt P41935 EMBL-EBI
WormBase CE07563 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_498251 C.Elegans Homeobox family member (ceh-10) [Caenorhabditis elegans] gb|AAB93323.1| C.elegans homeobox protein 10 [Caenorhabditis elegans] sp|P41935|HM10_CAEEL Homeobox protein ceh-10 gb|AAA93063.1| homeobox protein 1.0E-159
blast NP_498251 C.Elegans Homeobox family member (ceh-10) [Caenorhabditis elegans] gb|AAB93323.1| C.elegans homeobox protein 10 [Caenorhabditis elegans] sp|P41935|HM10_CAEEL Homeobox protein ceh-10 gb|AAA93063.1| homeobox protein 1.0E-158
blast CAE64395 Hypothetical protein CBG09085 [Caenorhabditis briggsae] 1.0E-115
blast AAH67664 Vsx2 protein [Danio rerio] 1.0E-49
blast AAH67664 Vsx2 protein [Danio rerio] 2.0E-49
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 5.00000009770741E-25
Pfam IPR001356 EMBL-EBI Homeobox 4.5E-31
Sequence
Target Sequence 
>C. ELEGANS:176624_AT
aagacatcgcacaattttcactcaataccagatcgacgaactcgagaaggcttttcaaga
ttctcattacccagacatctatgccagagaagtcctagctggaaagacagaattgcaaga
agatcggattcaggtatggttccaaaaccgtcgtgcaaaatggcgaaaaaccgagaaaac
ctggggaaaaagtaccataatggcagaatatgggctatatggagcaatggtacggcattc
tcttccacttccggaaacaattacaaagtcagctgaggcggcggatccacaacaaagtgc
tgctccgtggttgttaggaatgcacaagaaaagtatggaagctgcggctcacttggagag
tgttgaaaaatgtgatatgtcggatagtgatgatgatgaccgtccggtaactcctccagt
gcaacgtcaagtgaaaaacgagtacaaaccacgaataattgagcatgttcaacaacaagc
tccccaacatcagtcatcattgaatttcgatacttcacttgttgtcagttcctcactttc
acaattacatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACATCGCACAATTTTCACTCAA 465 153 423 Antisense
GGCTTTTCAAGATTCTCATTACCCA 377 537 471 Antisense
CTCATTACCCAGACATCTATGCCAG 486 229 485 Antisense
GGAGCAATGGTACGGCATTCTCTTC 552 519 643 Antisense
CATTCTCTTCCACTTCCGGAAACAA 501 215 658 Antisense
GGCGGCGGATCCACAACAAAGTGCT 292 539 699 Antisense
ACAAAGTGCTGCTCCGTGGTTGTTA 542 85 714 Antisense
AAGCTGCGGCTCACTTGGAGAGTGT 257 151 761 Antisense
CTCCTCCAGTGCAACGTCAAGTGAA 279 235 833 Antisense
TACTTCACTTGTTGTCAGTTCCTCA 225 645 933 Antisense
AGTTCCTCACTTTCACAATTACATT 192 65 949 Antisense
Sequence Source Affymetrix Proprietary Database