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[176616_s_at]

Description F10E9.6 /REP_DB=WormBase Gene ID /WP=CE00150 /GEN=mig-10 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 18      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 10      6grp_total > 28      4grp_total > 44      6grp_cgc > 02      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 609
1 2 3 4 range
A 1599.9
(3)
P 		1452.3
(1.2)
P 		1117
(-3)
P 		1255.4
(-1.3)
P 		483
B 1434.5
(0.2)
P 		1596
(3)
P 		1251.6
(-3)
P 		1443.8
(0.3)
P 		344
C 1397.2
(1.5)
P 		1537.2
(3)
P 		1140.7
(-1.4)
P 		990.9
(-3)
P 		546
avr 1477.2
(2.1) 		1528.5
(3) 		1169.8
(-3) 		1230
(-2) 		359

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1442
1 2 3 4 5 6 range
A 2111.6
(3)
P 		1627
(1)
P 		670.1
(-3)
P 		1131.6
(-1.1)
P 		1369.5
(-0.1)
P 		1253.8
(-0.6)
P 		1442
B 1638.1
(3)
P 		1180.7
(0.1)
P 		691.6
(-3)
P 		1141.8
(-0.1)
P 		966.3
(-1.3)
P 		900.9
(-1.7)
P 		947
C 1896.6
(3)
P 		1376
(-0.5)
P 		1228.1
(-1.4)
P 		1080.9
(-2.4)
P 		1274.8
(-1.1)
P 		994.3
(-3)
P 		902
avr 1882.1
(3) 		1394.6
(0.1) 		863.3
(-3) 		1118.1
(-1.5) 		1203.5
(-1) 		1049.7
(-1.9) 		1019
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 415
1 2 3 4 range
A 582.5
(3)
P 		315.3
(-1)
P 		292
(-1.4)
P 		183.8
(-3)
P 		399
B 457.4
(3)
P 		394.2
(0.7)
P 		290
(-3)
P 		307.7
(-2.4)
P 		167
C 462.5
(3)
P 		442
(2.6)
P 		397.6
(1.7)
P 		167.1
(-3)
P 		295
avr 500.8
(3) 		383.8
(0.5) 		326.5
(-0.7) 		219.5
(-3) 		281

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 557
1 2 3 4 5 6 range
A 389.3
(0.4)
P 		578.7
(3)
P 		145.9
(-3)
P 		287
(-1)
P 		413.3
(0.7)
P 		305.3
(-0.8)
P 		433
B 570
(3)
P 		393
(0.4)
P 		167.9
(-3)
P 		302.4
(-1)
P 		392.6
(0.4)
P 		335.9
(-0.5)
P 		402
C 703
(3)
P 		419.9
(-0.5)
P 		312.6
(-1.8)
P 		217.4
(-3)
P 		412.5
(-0.6)
P 		332.9
(-1.6)
P 		486
avr 554.1
(3) 		463.9
(1.4) 		208.8
(-3) 		268.9
(-2) 		406.1
(0.4) 		324.7
(-1) 		345
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176616_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7138
Sequence Type Exemplar sequence
Representative Public ID F10E9.6 NCBI
Target Description F10E9.6 /REP_DB=WormBase Gene ID /WP=CE00150 /GEN=mig-10 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026077(11), NM_066421(11), NM_066420(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026077 NCBI Caenorhabditis elegans abnormal cell MIGration family member (mig-10) (mig-10) mRNA, complete cds. 11/11 None
NM_066421 NCBI Caenorhabditis elegans abnormal cell MIGration family member (mig-10) (mig-10) mRNA, complete cds. 11/11 None
NM_066420 NCBI Caenorhabditis elegans abnormal cell MIGration family member (mig-10) (mig-10) mRNA, complete cds. 11/11 None
GENEFINDER00000040921 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8293965:8305487:1 11/11 None
SNAP00000040905 ENSEMBL cdna:SNAP chromosome:CEL140:III:8302835:8305487:1 11/11 None
F10E9.6c ENSEMBL cdna:known chromosome:CEL140:III:8279024:8305730:1 gene:F10E9.6 11/11 A 
F10E9.6a.3 ENSEMBL cdna:known chromosome:CEL140:III:8293947:8305487:1 gene:F10E9.6 11/11 None
F10E9.6a.2 ENSEMBL cdna:known chromosome:CEL140:III:8293951:8305487:1 gene:F10E9.6 11/11 None
F10E9.6a.1 ENSEMBL cdna:known chromosome:CEL140:III:8293953:8305487:1 gene:F10E9.6 11/11 None
F10E9.6b ENSEMBL cdna:known chromosome:CEL140:III:8300111:8305487:1 gene:F10E9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8300124-8305483(+) 100.0 100.0
Public Domain and Genome References
Ensembl F10E9.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAR25648 Abnormal cell migration protein 10, isoform c [Caenorhabditis elegans] ref|NP_001021248.1| abnormal cell MIGration family member (mig-10) [Caenorhabditis elegans] sp|P34400|MIG10_CAEEL Abnormal cell migration protein 0.0
blast AAK84523 Abnormal cell migration protein 10, isoform a [Caenorhabditis elegans] ref|NP_498822.2| abnormal cell MIGration family member (mig-10) [Caenorhabditis elegans] 0.0
blast AAA28018 Abnormal cell migration protein 10, isoform b [Caenorhabditis elegans] ref|NP_498821.2| abnormal cell MIGration family member (mig-10) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000159 EMBL-EBI RA domain 2.9E-4
Pfam IPR001849 EMBL-EBI Pleckstrin-like 2.9E-18
Pfam IPR000159 EMBL-EBI RA domain 2.9E-4
Pfam IPR001849 EMBL-EBI Pleckstrin-like 2.9E-18
Pfam IPR000159 EMBL-EBI RA domain 2.9E-4
Pfam IPR001849 EMBL-EBI Pleckstrin-like 2.9E-18
Pfam IPR000159 EMBL-EBI RA domain 2.9E-4
Pfam IPR001849 EMBL-EBI Pleckstrin-like 2.9E-18
Sequence
Target Sequence 
>C. ELEGANS:176616_S_AT
caagtatgtctgctgcttcatcttcaactgctatttctgaagttccacatagtttgagtc
atcatcagcgtacaccttctgttgcttcatcaattcaattgagttctcatatgatgaata
atccaacgcatcctttatcagtgaatgtcaggaatcagtcaccagcttctttttcagtaa
actcttgccaacaatctcatccatctcgaacgtcagcgaaattagagattcaatacgatg
agcaaccgactggaacaatcaaaagagcacctctagatgtgctccgtcgagtatcaagag
cttccacctcgtccccaacgattccccaagaagaatcggattcggacgaagagtttccag
cgccacctccagttgcctctgtgatgagaatgccgccaccagtgactccaccaaagcctt
gtactccattaacttctaagaaagcacctccaccgcctccgaagagatctgacacaacaa
aattgcaatcagcttcacctatggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGTATGTCTGCTGCTTCATCTTC 149 185 1391 Antisense
TCATCATCAGCGTACACCTTCTGTT 505 619 1449 Antisense
ACACCTTCTGTTGCTTCATCAATTC 660 109 1462 Antisense
AATCCAACGCATCCTTTATCAGTGA 463 167 1510 Antisense
TCAGGAATCAGTCACCAGCTTCTTT 529 621 1538 Antisense
AAACTCTTGCCAACAATCTCATCCA 649 127 1569 Antisense
TCGGACGAAGAGTTTCCAGCGCCAC 653 605 1732 Antisense
ACCTCCAGTTGCCTCTGTGATGAGA 526 87 1755 Antisense
AAAGCCTTGTACTCCATTAACTTCT 255 123 1803 Antisense
CACCGCCTCCGAAGAGATCTGACAC 430 201 1841 Antisense
ATTGCAATCAGCTTCACCTATGGCC 1 7 1872 Antisense
Sequence Source Affymetrix Proprietary Database