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[176612_at]

Description Y41D4B.B_rc /REP_DB=WormBase Gene ID /WP=CE21855 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster 6grp_total > 80      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 7.2
(-0.6)
A 		3.9
(-3)
A 		5.1
(-2.1)
A 		12.1
(3)
A 		8
B 6.9
(1.3)
A 		7.6
(3)
A 		5.1
(-3)
A 		7.2
(2)
A 		3
C 7.4
(-2.7)
A 		7.3
(-2.8)
A 		6.6
(-3)
A 		23.5
(3)
A 		17
avr 7.2
(-1.9) 		6.3
(-2.5) 		5.6
(-3) 		14.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 16.5
(3)
A 		6.6
(-1.2)
A 		6.4
(-1.2)
A 		2.7
(-2.8)
A 		7.6
(-0.7)
A 		2.2
(-3)
A 		14
B 3.4
(-3)
A 		10
(3)
A 		5.5
(-1.1)
A 		5.7
(-0.9)
A 		5.3
(-1.3)
A 		4.5
(-2)
A 		7
C 5.1
(-2.8)
A 		10.1
(-2.2)
A 		8.7
(-2.4)
A 		55.5
(3)
A 		3.5
(-3)
A 		6.6
(-2.6)
A 		52
avr 8.3
(-1.6) 		8.9
(-1.4) 		6.9
(-2.1) 		21.3
(3) 		5.5
(-2.6) 		4.4
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.6
(3)
A 		0.8
(-3)
A 		1.3
(-1.3)
A 		1.8
(0.3)
A 		2
B 2.2
(3)
A 		1.9
(1.2)
A 		1.2
(-3)
A 		1.5
(-1.2)
A 		1
C 2.5
(-1.7)
A 		2.1
(-3)
A 		2.3
(-2.4)
A 		4
(3)
A 		2
avr 2.4
(3) 		1.6
(-3) 		1.6
(-3) 		2.4
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3
(3)
A 		2.4
(1.6)
A 		1.4
(-0.8)
A 		0.7
(-2.5)
A 		2.3
(1.3)
A 		0.5
(-3)
A 		3
B 1.2
(-3)
A 		3.3
(3)
A 		1.3
(-2.7)
A 		1.5
(-2.1)
A 		2.1
(-0.4)
A 		1.7
(-1.6)
A 		2
C 1.9
(-2.5)
A 		3.1
(-1.8)
A 		2.2
(-2.3)
A 		11.2
(3)
A 		1.1
(-3)
A 		2.2
(-2.3)
A 		10
avr 2
(-2) 		2.9
(-0.2) 		1.6
(-2.8) 		4.5
(3) 		1.8
(-2.4) 		1.5
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176612_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28191
Sequence Type Exemplar sequence
Representative Public ID Y41D4B.B NCBI
Target Description Y41D4B.B_rc /REP_DB=WormBase Gene ID /WP=CE21855 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y41D4B.B
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y41D4B.B Y41D4B.B_rc /REP_DB=WormBase Gene ID /WP=CE21855 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:176612_AT
ataagttgccgaattgctggcaggaagttggcgagttgttggcaggaagttgccacgtag
tggcagcaagtgggaaagaaggctcagcaacatctaaatgttggcaggaatgtgcaaaag
tttggcgggaagttgcaagtaagcaaagtttggcagaaagttgcctaccccaaacggcaa
aatgacaattttccaaaaatgaaaatttccggcaaatcggcaaaccggcaaattgccgtt
ttgccgaactcgtcgaaaaattccggaaaattaacaatttggtgaaaatgaaaatttcag
gcaaatcagcaatccggcaattttccgatttgtcgaaaactttcggaacggcaaattgac
aatttgccgaaaatgaacatttccggcaaatcggcaaagtgccggaactgaaatttcccg
ccaaatcggcaaaccggcaattttccgacttgccgaatttgtcgaaaatttctggaacgg
caacttgacaatttgccgaaaaaaaaaaattccgacaaatcggcaattcgctggagacaa
aaaattccgacaaatcggcagttttccgaattgccgaatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAAGTTGCCGAATTGCTGGCAGGA 655 25 18 Antisense
GCTGGCAGGAAGTTGGCGAGTTGTT 119 293 33 Antisense
GTTTGGCAGAAAGTTGCCTACCCCA 238 451 165 Antisense
GCCTACCCCAAACGGCAAAATGACA 37 281 180 Antisense
TGCCGAACTCGTCGAAAAATTCCGG 211 585 259 Antisense
ATTTCAGGCAAATCAGCAATCCGGC 681 15 311 Antisense
AAATCAGCAATCCGGCAATTTTCCG 558 111 320 Antisense
GTGCCGGAACTGAAATTTCCCGCCA 550 477 416 Antisense
AATTTCTGGAACGGCAACTTGACAA 704 173 484 Antisense
ACAAATCGGCAATTCGCTGGAGACA 184 111 532 Antisense
GCAGTTTTCCGAATTGCCGAATTTG 250 311 575 Antisense
Sequence Source Affymetrix Proprietary Database