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[176609_s_at]

Description F58B6.3A /REP_DB=WormBase Gene ID /WP=CE25917 /GEN=par-2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 15      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 44.4
(3)
A 		39.4
(-0.1)
A 		36.5
(-1.9)
A 		34.7
(-3)
A 		10
B 55.3
(3)
A 		24.6
(-3)
A 		45.1
(1)
A 		46.2
(1.2)
A 		31
C 43.8
(0.7)
A 		34.7
(-2.1)
A 		31.8
(-3)
A 		51.3
(3)
A 		20
avr 47.8
(3) 		32.9
(-3) 		37.8
(-1) 		44.1
(1.5) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 40.1
(3)
A 		23.2
(0.2)
A 		37.8
(2.6)
A 		3.7
(-3)
A 		36.1
(2.3)
A 		27.9
(1)
A 		36
B 43.5
(0.7)
A 		57.2
(2.6)
A 		59.8
(3)
A 		18
(-3)
A 		44.6
(0.8)
A 		37.1
(-0.3)
A 		42
C 60.5
(2.5)
A 		62.9
(3)
A 		37.3
(-1.9)
A 		59.3
(2.3)
A 		31.7
(-3)
A 		35.8
(-2.2)
A 		31
avr 48
(3) 		47.8
(2.9) 		45
(2.1) 		27
(-3) 		37.5
(0) 		33.6
(-1.1) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 16.2
(3)
A 		8.6
(-1.1)
A 		9.5
(-0.6)
A 		5.1
(-3)
A 		11
B 17.6
(3)
A 		6.1
(-3)
A 		10.5
(-0.7)
A 		9.8
(-1.1)
A 		12
C 14.5
(3)
A 		10
(-1.6)
A 		11.1
(-0.5)
A 		8.6
(-3)
A 		6
avr 16.1
(3) 		8.2
(-2.7) 		10.4
(-1.1) 		7.8
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 7.4
(0.9)
A 		8.2
(1.4)
A 		8.2
(1.4)
A 		0.9
(-3)
A 		10.9
(3)
A 		6.8
(0.5)
A 		10
B 15.1
(1.3)
A 		19.1
(3)
A 		14.5
(1.1)
A 		4.8
(-3)
A 		18.1
(2.6)
A 		13.8
(0.8)
A 		14
C 22.4
(3)
A 		19.2
(1.5)
A 		9.5
(-3)
A 		11.9
(-1.9)
A 		10.2
(-2.7)
A 		12
(-1.8)
A 		13
avr 15
(2.7) 		15.5
(3) 		10.7
(-0) 		5.9
(-3) 		13.1
(1.5) 		10.9
(0.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176609_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8288
Sequence Type Exemplar sequence
Representative Public ID F58B6.3A NCBI
Target Description F58B6.3A /REP_DB=WormBase Gene ID /WP=CE25917 /GEN=par-2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064931(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064931 NCBI Caenorhabditis elegans abnormal embryonic PARtitioning of cytoplasm family member (par-2) (par-2) mRNA, complete cds. 11/11 None
F58B6.3a ENSEMBL cdna:known chromosome:CEL140:III:1081391:1086645:1 gene:F58B6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003675 6/11 Cross Hyb Matching Probes None
GENEFINDER00000003680 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175275 2 1 NM_001027459 172125_x_at (11), 175620_at (11)
NM_064931 176609_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1081396-1086599(+) 89.92 100.0
Public Domain and Genome References
Ensembl F58B6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71369 Abnormal embryonic partitioning of cytoplasm protein 2, isoform a [Caenorhabditis elegans] ref|NP_497332.3| abnormal embryonic PARtitioning of cytoplasm family member (par-2) [Caenorhabditis elegans] 0.0
blast AAA62312 par-2 1.0E-96
blast CAE69128 Hypothetical protein CBG15155 [Caenorhabditis briggsae] 4.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.3E-8
Sequence
Target Sequence 
>C. ELEGANS:176609_S_AT
ttccccgaatttctgctcaatttggagcaattttttgccgattttttcacaacttcctcg
aattttctcaatttttcaccgatttccgccgattttcatggattttatgccattttcgcc
cctttttcctccgtcatttctgaaaatttccagaaaacccccaatgtctcacaagcgata
cacaatcgacgaggcgagcgaagtgatgaagtcgtttaaccagcaaaaatacgtggatct
tcgcgaaagttcggtagaaagtgaccgaatgttggaggaaatgctggaaaagcagaagca
actcgtctggaaatccgttcgaatcgccagaatctcccgggagaaggatcgggccgaaaa
gactgagacactgatggaagaggttcgattcttctggagcatcgagatgcagtgtaggca
tgcggtggaggattggaagcgtcggaagcgagagaatgatcggaagcgtcggacagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCCCGAATTTCTGCTCAATTTGG 60 697 717 Antisense
TTGCCGATTTTTTCACAACTTCCTC 695 699 751 Antisense
ACAACTTCCTCGAATTTTCTCAATT 326 113 765 Antisense
ATTTCCGCCGATTTTCATGGATTTT 538 17 798 Antisense
ATGGATTTTATGCCATTTTCGCCCC 418 51 814 Antisense
CCCCAATGTCTCACAAGCGATACAC 450 261 875 Antisense
ACGTGGATCTTCGCGAAAGTTCGGT 620 95 947 Antisense
GCAACTCGTCTGGAAATCCGTTCGA 472 319 1014 Antisense
ATCCGTTCGAATCGCCAGAATCTCC 695 37 1029 Antisense
AGAGGTTCGATTCTTCTGGAGCATC 50 69 1095 Antisense
GAATGATCGGAAGCGTCGGACAGAC 624 331 1170 Antisense
Sequence Source Affymetrix Proprietary Database