[Home] | [Total List]

[176608_s_at]

Description F54F2.2 /REP_DB=WormBase Gene ID /WP=CE25003 /CHR=3 /FEA=Sanger Annotation /DEF=locus:zfp-1 (ST.LOUIS)
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 17      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 10      6grp_total > 17      4grp_total > 30      6grp_highest_sub > De      6grp_cgc > 12      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1365
1 2 3 4 range
A 2516.5
(3)
P 		2084.5
(0.7)
P 		1367.9
(-3)
P 		2130
(1)
P 		1149
B 2539.7
(3)
P 		1778.5
(-1.3)
P 		1485.6
(-3)
P 		2016.3
(0)
P 		1054
C 2637.3
(3)
P 		1641.3
(-1.4)
P 		1272
(-3)
P 		1920.8
(-0.1)
P 		1365
avr 2564.5
(3) 		1834.8
(-0.7) 		1375.2
(-3) 		2022.4
(0.3) 		1189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1276
1 2 3 4 5 6 range
A 2136.4
(3)
P 		1904.7
(1.9)
P 		900.2
(-3)
P 		1187.3
(-1.6)
P 		1033.4
(-2.4)
P 		1437.4
(-0.4)
P 		1236
B 1974.2
(3)
P 		1334.3
(-0.4)
P 		1049.6
(-2)
P 		947.4
(-2.5)
P 		860
(-3)
P 		1034.5
(-2.1)
P 		1114
C 2019.6
(3)
P 		1135.4
(-1.6)
P 		1584
(0.7)
P 		985.7
(-2.4)
P 		1165.4
(-1.5)
P 		870.5
(-3)
P 		1149
avr 2043.4
(3) 		1458.1
(-0.4) 		1177.9
(-2.1) 		1040.1
(-2.9) 		1019.6
(-3) 		1114.1
(-2.4) 		1024
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 605
1 2 3 4 range
A 916.3
(3)
P 		452.5
(-1.6)
P 		357.6
(-2.5)
P 		311.8
(-3)
P 		605
B 809.9
(3)
P 		439.2
(-1.8)
P 		344.2
(-3)
P 		429.7
(-1.9)
P 		466
C 873
(3)
P 		471.9
(-1.4)
P 		443.3
(-1.7)
P 		323.9
(-3)
P 		549
avr 866.4
(3) 		454.5
(-1.8) 		381.7
(-2.7) 		355.1
(-3) 		511

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 553
1 2 3 4 5 6 range
A 393.8
(-0.5)
P 		677.4
(3)
P 		196
(-3)
P 		301.1
(-1.7)
P 		311.8
(-1.6)
P 		350
(-1.1)
P 		481
B 686.9
(3)
P 		444.1
(-0.3)
P 		254.9
(-2.9)
P 		250.9
(-3)
P 		349.4
(-1.6)
P 		385.8
(-1.1)
P 		436
C 748.6
(3)
P 		346.4
(-1.4)
P 		403.2
(-0.8)
P 		198.2
(-3)
P 		377.1
(-1)
P 		291.4
(-2)
P 		550
avr 609.8
(3) 		489.3
(1) 		284.7
(-2.4) 		250.1
(-3) 		346.1
(-1.4) 		342.4
(-1.5) 		360
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176608_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6698
Sequence Type Exemplar sequence
Representative Public ID F54F2.2 NCBI
Target Description F54F2.2 /REP_DB=WormBase Gene ID /WP=CE25003 /CHR=3 /FEA=Sanger Annotation /DEF=locus:zfp-1 (ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066542(11), NM_001027440(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066542 NCBI Caenorhabditis elegans Zinc Finger Protein family member (zfp-1) (zfp-1) mRNA, complete cds. 11/11 A 
NM_001027440 NCBI Caenorhabditis elegans Zinc Finger Protein family member (zfp-1) (zfp-1) mRNA, complete cds. 11/11 None
GENEFINDER00000044299 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8798457:8805527:1 11/11 None
SNAP00000044288 ENSEMBL cdna:SNAP chromosome:CEL140:III:8802594:8805527:1 11/11 None
F54F2.2a.3 ENSEMBL cdna:known chromosome:CEL140:III:8793934:8805527:1 gene:F54F2.2 11/11 None
F54F2.2a.1 ENSEMBL cdna:known chromosome:CEL140:III:8798298:8806176:1 gene:F54F2.2 11/11 A 
F54F2.2a.2 ENSEMBL cdna:known chromosome:CEL140:III:8798300:8806174:1 gene:F54F2.2 11/11 A 
F54F2.2c.2 ENSEMBL cdna:known chromosome:CEL140:III:8802726:8805527:1 gene:F54F2.2 11/11 None
F54F2.2c.1 ENSEMBL cdna:known chromosome:CEL140:III:8802727:8805527:1 gene:F54F2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176237 3 2 NM_001027440 176608_s_at (11)
NM_066542 176608_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8798452-8805523(+) 100.0 100.0
Public Domain and Genome References
Ensembl F54F2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK26137 Zinc finger protein protein 1, isoform a [Caenorhabditis elegans] ref|NP_498943.2| Zinc Finger Protein family member (zfp-1) [Caenorhabditis elegans] sp|P34447|YM2A_CAEEL Hypothetical protein F54F2.2 in chromosome III, isoform a 0.0
blast AAC46918 zinc finger protein prf||2122400A CEZF gene 0.0
blast AAO91714 Zinc finger protein protein 1, isoform c [Caenorhabditis elegans] ref|NP_001022611.1| Zinc Finger Protein family member (zfp-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 1.5E-17
Sequence
Target Sequence 
>C. ELEGANS:176608_S_AT
aaattgcacatcacctggatccaacatcgattgttccgaaagctgaagtacacaaacaag
aaccattgtctgcgcctacgtctgtcccattgcctgcgaatcatagcagctctttgtttg
aagacatcaaggcaccaaaagctacgtacagcaggaaaactccatccaatatacctctaa
ctgttccactgtcaacggctgctactgcattgactacgactaccgctgcatcatcaggtg
ctccagttaactcaaatattcagaatcacagagcaacaccatccaccgctggtgctccaa
tggctgcaactcccatcatgactgcagttacatctgcaaatgaattagctgcactcagtc
cggaacgcgcacaagctcttctgaacatgtatcgcatgccacttgatgccaacgttgctg
cacaactatcgatgatcaccaacttcccgggccaagtcaatccaagtctattctcacgac
ttttggctgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTGCACATCACCTGGATCCAAC 609 113 2039 Antisense
AACAAGAACCATTGTCTGCGCCTAC 333 133 2093 Antisense
GTCCCATTGCCTGCGAATCATAGCA 5 477 2122 Antisense
AAAACTCCATCCAATATACCTCTAA 124 131 2194 Antisense
GCTACTGCATTGACTACGACTACCG 388 301 2239 Antisense
TCATCAGGTGCTCCAGTTAACTCAA 8 621 2269 Antisense
GAATTAGCTGCACTCAGTCCGGAAC 644 321 2380 Antisense
GCGCACAAGCTCTTCTGAACATGTA 295 287 2405 Antisense
AACTATCGATGATCACCAACTTCCC 478 139 2462 Antisense
GGGCCAAGTCAATCCAAGTCTATTC 29 493 2487 Antisense
TCTATTCTCACGACTTTTGGCTGTT 488 613 2505 Antisense
Sequence Source Affymetrix Proprietary Database