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[176606_at]

Description F48C1.7 /REP_DB=WormBase Gene ID /WP=CE10744 /GEN=spe-11 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 32      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1.5
(-3)
A 		2.7
(2.1)
A 		2.9
(3)
A 		1.9
(-1.3)
A 		1
B 2.5
(-3)
A 		6.9
(-1.3)
A 		18
(3)
A 		13.2
(1.1)
A 		16
C 1.5
(-2.7)
A 		2.3
(-1.3)
A 		1.3
(-3)
A 		4.8
(3)
A 		4
avr 1.8
(-3) 		4
(-0.6) 		7.4
(3) 		6.6
(2.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 5.6
(-2.9)
A 		1.6
(-3)
A 		2.8
(-3)
A 		24.6
(-2.4)
A 		120.9
(0.3)
P 		221.1
(3)
P 		220
B 0.8
(-3)
A 		5.9
(-2.9)
A 		1.8
(-3)
A 		9.5
(-2.8)
A 		165.9
(0.8)
P 		259.7
(3)
P 		259
C 2.8
(-3)
A 		6.4
(-2.9)
A 		2.4
(-3)
A 		30.1
(-2.4)
A 		111.2
(-0.6)
P 		277.4
(3)
P 		275
avr 3.1
(-3) 		4.6
(-2.9) 		2.3
(-3) 		21.4
(-2.5) 		132.7
(0.1) 		252.7
(3) 		250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.5
(-0.6)
A 		0.6
(0.6)
A 		0.8
(3)
A 		0.3
(-3)
A 		1
B 0.8
(-3)
A 		1.7
(-1.4)
A 		4.2
(3)
A 		2.8
(0.5)
A 		3
C 0.5
(-3)
A 		0.7
(1)
A 		0.5
(-3)
A 		0.8
(3)
A 		0
avr 0.6
(-3) 		1
(-1) 		1.8
(3) 		1.3
(0.5) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 1
(-3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		6.2
(-2.4)
A 		36.5
(1)
P 		53.8
(3)
P 		53
B 0.3
(-3)
A 		2
(-2.9)
A 		0.4
(-3)
A 		2.5
(-2.9)
A 		67.4
(1.2)
P 		96.9
(3)
P 		97
C 1
(-3)
A 		2
(-2.9)
A 		0.6
(-3)
A 		6.1
(-2.6)
A 		36
(-0.7)
P 		92.9
(3)
P 		92
avr 0.8
(-3) 		1.5
(-2.9) 		0.5
(-3) 		4.9
(-2.7) 		46.6
(0.4) 		81.2
(3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176606_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.865
Sequence Type Exemplar sequence
Representative Public ID F48C1.7 NCBI
Target Description F48C1.7 /REP_DB=WormBase Gene ID /WP=CE10744 /GEN=spe-11 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059168(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059168 NCBI Caenorhabditis elegans defective SPErmatogenesis family member (spe-11) (spe-11) mRNA, complete cds. 11/11 None
GENEFINDER00000025993 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5330646:5332160:-1 11/11 None
SNAP00000025986 ENSEMBL cdna:SNAP chromosome:CEL140:I:5330758:5332160:-1 11/11 None
F48C1.7 ENSEMBL cdna:known chromosome:CEL140:I:5330646:5332160:-1 gene:F48C1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5330645-5332160(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol spe-11
Ensembl F48C1.7
Entrez Gene 172179 Entrez gene
SwissProt P54217 EMBL-EBI
WormBase CE10744 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52348 Defective spermatogenesis protein 11 [Caenorhabditis elegans] ref|NP_491569.1| defective SPErmatogenesis family member (spe-11) [Caenorhabditis elegans] sp|P54217|SPE11_CAEEL Spermatocyte protein spe-11 gb|AAA97861.1| SPE-11 1.0E-133
blast AAB52348 Defective spermatogenesis protein 11 [Caenorhabditis elegans] ref|NP_491569.1| defective SPErmatogenesis family member (spe-11) [Caenorhabditis elegans] sp|P54217|SPE11_CAEEL Spermatocyte protein spe-11 gb|AAA97861.1| SPE-11 1.0E-120
blast CAE66940 Hypothetical protein CBG12332 [Caenorhabditis briggsae] 8.0E-67
blast CAE66940 Hypothetical protein CBG12332 [Caenorhabditis briggsae] 2.0E-57
Sequence
Target Sequence 
>C. ELEGANS:176606_AT
ttgccgttggtttccgattcagagtttttgaaaggaagaaaggagcacaaagagtacaat
tcaaaagctcgcatggacatacttgatggcctggatgaggttaatgagggattcttcaac
tgcgggaaaggagcggctatgaatattcgttataatgataaaaatgtttcaaagaaggga
gcaaagaagtttgtagctactgttgaaaccgcaatgaagaaagcaggtaacccgacaatg
gagcagatgatgacggatgatttggatgaagatgaagctcgtgctgaagccgaatgggaa
cgacaacgtgaacagagaaagttagcttcaagagcttatgatgctgcgatggatgagcgt
gaggacgatgcaaagtatgtaccttgggacgagtactgtcaagagatggaggagcttgga
aaagaattgaagattggagaaaagcattacaaaaagtggcttgaaaagaagatggatgag
aataaggttactcacaaattcaatgcatatcagttggatctcaagtgtctcgatgaggac
gctttttccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCCGTTGGTTTCCGATTCAGAGT 367 685 289 Antisense
GCTCGCATGGACATACTTGATGGCC 480 299 355 Antisense
ATGAGGGATTCTTCAACTGCGGGAA 134 47 392 Antisense
AAGGAGCGGCTATGAATATTCGTTA 74 159 416 Antisense
GTAGCTACTGTTGAAACCGCAATGA 314 457 481 Antisense
GCAGGTAACCCGACAATGGAGCAGA 333 311 511 Antisense
GAAGCTCGTGCTGAAGCCGAATGGG 232 343 562 Antisense
GATGCTGCGATGGATGAGCGTGAGG 512 413 628 Antisense
GTACCTTGGGACGAGTACTGTCAAG 164 457 667 Antisense
ATCAGTTGGATCTCAAGTGTCTCGA 684 27 797 Antisense
GTCTCGATGAGGACGCTTTTTCCAA 210 471 815 Antisense
Sequence Source Affymetrix Proprietary Database