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[176604_at] 7TM chemoreceptor, srv family

Description R13F6.3 /REP_DB=WormBase Gene ID /WP=CE00718 /GEN=srg-12 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 11      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 41      6grp_total > 22      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 61      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Hat      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 791
1 2 3 4 range
A 1093.2
(3)
P 		750.1
(-0.1)
P 		812.4
(0.5)
P 		424.4
(-3)
P 		669
B 1210.4
(3)
P 		762.4
(-0.4)
P 		679.3
(-1)
P 		419
(-3)
P 		791
C 1139.1
(3)
P 		799.6
(0.2)
P 		802.1
(0.2)
P 		423
(-3)
P 		716
avr 1147.6
(3) 		770.7
(-0.1) 		764.6
(-0.2) 		422.1
(-3) 		726

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 600
1 2 3 4 5 6 range
A 1062
(3)
P 		882.6
(1.2)
P 		876
(1.1)
P 		696.7
(-0.7)
P 		728.2
(-0.3)
P 		461.8
(-3)
P 		600
B 868.5
(3)
P 		860.3
(2.9)
P 		783.1
(1.5)
P 		806.5
(1.9)
P 		609.7
(-1.5)
P 		523
(-3)
P 		346
C 785.3
(1.3)
P 		890.5
(2.9)
P 		839.7
(2.1)
P 		896
(3)
P 		558.3
(-2.1)
P 		499.5
(-3)
P 		397
avr 905.3
(3) 		877.8
(2.6) 		832.9
(1.9) 		799.7
(1.5) 		632.1
(-1) 		494.8
(-3) 		411
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 336
1 2 3 4 range
A 398.1
(3)
P 		162.8
(-1.2)
P 		212.4
(-0.3)
P 		62.1
(-3)
P 		336
B 386
(3)
P 		188.3
(-1)
P 		157.4
(-1.6)
P 		89.3
(-3)
P 		297
C 377.1
(3)
P 		229.9
(0.1)
P 		279.6
(1.1)
P 		71.3
(-3)
P 		306
avr 387.1
(3) 		193.7
(-0.7) 		216.5
(-0.3) 		74.2
(-3) 		313

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 195.8
(-0.5)
P 		313.9
(3)
P 		190.8
(-0.7)
P 		176.7
(-1.1)
P 		219.7
(0.2)
P 		112.4
(-3)
P 		202
B 302.2
(3)
P 		286.4
(2.2)
P 		190.2
(-3)
P 		213.6
(-1.7)
P 		247.7
(0.1)
P 		195
(-2.7)
P 		112
C 291.1
(3)
P 		271.7
(2.1)
P 		213.7
(-0.7)
P 		180.2
(-2.4)
P 		180.6
(-2.4)
P 		167.2
(-3)
P 		124
avr 263
(1.7) 		290.7
(3) 		198.2
(-1.2) 		190.2
(-1.6) 		216
(-0.4) 		158.2
(-3) 		133
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176604_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7177
Sequence Type Exemplar sequence
Representative Public ID R13F6.3 NCBI
Target Description R13F6.3 /REP_DB=WormBase Gene ID /WP=CE00718 /GEN=srg-12 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066088(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066088 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-1) (srv-1) mRNA, complete cds. 11/11 None
GENEFINDER00000003268 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6850174:6852882:1 9/11 None
SNAP00000003259 ENSEMBL cdna:SNAP chromosome:CEL140:III:6851243:6852882:1 9/11 None
R13F6.3 ENSEMBL cdna:known chromosome:CEL140:III:6851184:6853019:1 gene:R13F6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6851241-6853047(+) 99.9 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srv family
Gene Symbol srv-1
Ensembl R13F6.3
Entrez Gene 191838 Entrez gene
SwissProt P46564 EMBL-EBI
WormBase CE33437 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498489 Serpentine Receptor, class V family member (srv-1) [Caenorhabditis elegans] gb|AAC47043.2| Serpentine receptor, class v protein 1 [Caenorhabditis elegans] sp|P46564|SRV1_CAEEL Serpentine receptor class V-1 (Protein srv-1) (Protein srg-12) 1.0E-165
blast CAE70101 Hypothetical protein CBG16545 [Caenorhabditis briggsae] 1.0E-158
blast 2123261AM chemosensory receptor 1.0E-135
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498489.2 7 15-34,46-68,88-110,131-153,180-202,222-244,254-276
R13F6.3 7 15-34,46-68,88-110,131-153,180-202,222-244,254-276
GENEFINDER00000003268 7 142-164,177-199,219-241,262-279,308-330,350-372,382-404
SNAP00000003259 7 15-34,46-68,88-110,131-153,180-202,222-244,254-276
Sequence
Target Sequence 
>C. ELEGANS:176604_AT
taacaccactattcttcatggctccactattctcaaccgatttcaaattcctattctccc
ataattctggttcagttatatttgcagcaagtgatgctcgtttccataagaactattttc
tggcaatggcgatggtggatggaattctgattaatttgattgttttgttactttatggag
ctatttttattagagtgcacacccatgtggtcgttagaaaacccggagaacttgcacttc
gtctagctctctccgctttcataattttcatttgctatcttgctcttggagtttgttccc
tgctttctgcattgactccgcctcctgatgcatgggtctaccgtaccatgtggcgttcac
tcgacatctgggagtcttctcttatcaaggagtcagcacaaaaaaccataattcactgct
tcaggctgtttagcagtactttattttttccctgctttttgttcaaatcagcttatttct
gctcaaccatcataattatccaactgcctctaaagctcttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACACCACTATTCTTCATGGCTCC 370 639 434 Antisense
TCCACTATTCTCAACCGATTTCAAA 27 589 456 Antisense
TTTCAAATTCCTATTCTCCCATAAT 645 671 474 Antisense
TAGAGTGCACACCCATGTGGTCGTT 696 651 624 Antisense
GAAAACCCGGAGAACTTGCACTTCG 545 353 650 Antisense
TCTCTCCGCTTTCATAATTTTCATT 50 613 681 Antisense
TCATTTGCTATCTTGCTCTTGGAGT 555 619 701 Antisense
GACATCTGGGAGTCTTCTCTTATCA 399 369 796 Antisense
AAACCATAATTCACTGCTTCAGGCT 443 125 836 Antisense
AAATCAGCTTATTTCTGCTCAACCA 638 117 898 Antisense
TCCAACTGCCTCTAAAGCTCTTCGA 705 587 932 Antisense
Sequence Source Affymetrix Proprietary Database