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[176602_at]

Description C30A5.5 /REP_DB=WormBase Gene ID /WP=CE00096 /GEN=snb-5 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 05      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 34.6
(-1.5)
A 		18.8
(-3)
A 		32.9
(-1.6)
A 		80.2
(3)
A 		61
B 37.4
(-1)
A 		15.1
(-3)
A 		29.5
(-1.7)
A 		83
(3)
A 		68
C 51.8
(0.9)
A 		18.8
(-3)
A 		22.2
(-2.6)
A 		70.1
(3)
A 		51
avr 41.3
(-0.6) 		17.6
(-3) 		28.2
(-1.9) 		77.8
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 10.8
(-2.8)
A 		8.7
(-3)
A 		74.9
(3)
A 		13
(-2.6)
A 		14.2
(-2.5)
A 		9.5
(-2.9)
A 		66
B 54.5
(2.9)
A 		46.8
(1.9)
A 		38.4
(0.8)
A 		8.4
(-3)
A 		55.5
(3)
A 		46.6
(1.9)
A 		47
C 32
(-0.4)
A 		58.6
(3)
A 		36.3
(0.1)
A 		11.5
(-3)
A 		39.8
(0.6)
A 		58.8
(3)
A 		47
avr 32.4
(0.3) 		38
(1.2) 		49.9
(3) 		11
(-3) 		36.5
(0.9) 		38.3
(1.2) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 12.6
(3)
A 		4.1
(-3)
A 		8.6
(0.2)
A 		11.7
(2.4)
A 		9
B 11.9
(0.5)
A 		3.7
(-3)
A 		6.8
(-1.7)
A 		17.7
(3)
A 		14
C 17.2
(3)
A 		5.4
(-3)
A 		7.7
(-1.8)
A 		11.8
(0.3)
A 		12
avr 13.9
(3) 		4.4
(-3) 		7.7
(-0.9) 		13.7
(2.9) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2
(-3)
A 		3.1
(-2.5)
A 		16.3
(3)
A 		3.3
(-2.5)
A 		4.3
(-2)
A 		2.3
(-2.9)
A 		14
B 19
(1.9)
A 		15.6
(0.9)
A 		9.3
(-0.9)
A 		2.2
(-3)
A 		22.6
(3)
A 		17.4
(1.5)
A 		20
C 11.8
(0.3)
A 		17.9
(2.4)
A 		9.2
(-0.6)
A 		2.3
(-3)
A 		12.9
(0.7)
A 		19.7
(3)
A 		17
avr 10.9
(1.7) 		12.2
(2.4) 		11.6
(2) 		2.6
(-3) 		13.3
(3) 		13.1
(2.9) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176602_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7786
Sequence Type Exemplar sequence
Representative Public ID C30A5.5 NCBI
Target Description C30A5.5 /REP_DB=WormBase Gene ID /WP=CE00096 /GEN=snb-5 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066389(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066389 NCBI Caenorhabditis elegans SyNaptoBrevin related family member (snb-5) (snb-5) mRNA, complete cds. 11/11 None
GENEFINDER00000019648 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8203007:8205030:1 11/11 None
C30A5.5 ENSEMBL cdna:known chromosome:CEL140:III:8203007:8205030:1 gene:C30A5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028451 8/11 Cross Hyb Matching Probes None
SNAP00000019634 4/11 Cross Hyb Matching Probes None
ZK795.4 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8203002-8205026(+) 100.0 100.0
chrIV:12560844-12561153(+) 99.35 99.35
Public Domain and Genome References
Gene Title
Gene Symbol snb-5
Ensembl C30A5.5
Entrez Gene 191767 Entrez gene
SwissProt P34351 EMBL-EBI
WormBase CE00096 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB59178 Synaptobrevin related protein 5 [Caenorhabditis elegans] ref|NP_498790.1| SyNaptoBrevin related family member (snb-5) [Caenorhabditis elegans] sp|P34351|SNB5_CAEEL Synaptobrevin-like protein 1.0E-51
blast CAE17894 Hypothetical protein ZK795.4 [Caenorhabditis elegans] emb|CAE18062.1| Hypothetical protein ZK795.4 [Caenorhabditis elegans] ref|NP_001023622.1| ZK795.4 [Caenorhabditis elegans] 2.0E-51
blast CAB03366 Hypothetical protein T14D7.3 [Caenorhabditis elegans] ref|NP_495887.1| T14D7.3 [Caenorhabditis elegans] 3.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR001388 EMBL-EBI Synaptobrevin 1.8E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498790.1 1 79-101
C30A5.5 1 79-101
GENEFINDER00000019648 1 79-101
Sequence
Target Sequence 
>C. ELEGANS:176602_AT
caccaccagtgagccgtatcggttgggacgatcaaaagattatgagaacaagaagagaac
tggattcggtgaaggccattatgaaggagaatgtgcaaaaaatcatggagagacagggaa
aacttgatgatcttgttgaaagagctcagaggctcgaggaggcatcggatgtgtacgtca
aatgcgccgtcaagataaaacgagagatgagctggaaggccaattctcttcgctacggga
tcattgctgtgtcaagtgtctccgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCACCAGTGAGCCGTATCGGTTG 525 201 26 Antisense
GAGCCGTATCGGTTGGGACGATCAA 175 385 36 Antisense
GAACTGGATTCGGTGAAGGCCATTA 142 349 82 Antisense
GGGAAAACTTGATGATCTTGTTGAA 224 495 141 Antisense
GCTCAGAGGCTCGAGGAGGCATCGG 80 301 169 Antisense
GAGGCATCGGATGTGTACGTCAAAT 255 403 184 Antisense
GTGTACGTCAAATGCGCCGTCAAGA 695 471 196 Antisense
GAGCTGGAAGGCCAATTCTCTTCGC 284 387 234 Antisense
ATTCTCTTCGCTACGGGATCATTGC 624 7 248 Antisense
TTCGCTACGGGATCATTGCTGTGTC 76 697 254 Antisense
CATTGCTGTGTCAAGTGTCTCCGCA 2 217 267 Antisense
Sequence Source Affymetrix Proprietary Database