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[176600_s_at]

Description K10B3.9 /REP_DB=WormBase Gene ID /WP=CE07372 /GEN=mai-1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 76      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 91      6grp_total > 66      4grp_total > 17      6grp_highest_sub > In      6grp_cgc > 57      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 138.7
(-3)
P 		175.3
(-2)
P 		168.6
(-2.1)
P 		348.8
(3)
P 		210
B 177.8
(-3)
P 		218
(-1.9)
P 		211.7
(-2.1)
P 		403.3
(3)
P 		226
C 166.2
(-3)
P 		257.8
(-0.5)
P 		245.7
(-0.8)
P 		381.8
(3)
P 		216
avr 160.9
(-3) 		217
(-1.4) 		208.7
(-1.7) 		378
(3) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 95.2
(-3)
P 		252.7
(0.7)
P 		206.7
(-0.4)
P 		209.1
(-0.3)
P 		165.8
(-1.3)
P 		350
(3)
P 		255
B 128.9
(-3)
P 		195.2
(-0.8)
P 		305
(2.8)
P 		165.7
(-1.8)
P 		191.6
(-0.9)
P 		311.9
(3)
P 		183
C 220.2
(0.1)
P 		138.2
(-2.3)
P 		207
(-0.3)
P 		115.7
(-3)
P 		257
(1.2)
P 		318.7
(3)
P 		203
avr 148.1
(-3) 		195.4
(-1.4) 		239.6
(0.1) 		163.5
(-2.5) 		204.8
(-1.1) 		326.9
(3) 		179
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 50.5
(2.7)
P 		38.1
(-3)
P 		44.1
(-0.2)
P 		51.1
(3)
P 		13
B 56.7
(-1.7)
P 		53.8
(-2.2)
P 		49
(-3)
P 		85.9
(3)
P 		37
C 55
(-3)
P 		74.1
(0.7)
P 		85.6
(3)
P 		64.4
(-1.2)
P 		31
avr 54.1
(-3) 		55.3
(-2.4) 		59.6
(-0.5) 		67.1
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 17.6
(-3)
P 		89.9
(3)
P 		45
(-0.7)
P 		53
(-0.1)
P 		50
(-0.3)
P 		85.2
(2.6)
P 		72
B 44.9
(-2.9)
P 		65
(-1.3)
P 		74.1
(-0.5)
P 		43.9
(-3)
P 		77.9
(-0.2)
P 		116.3
(3)
P 		72
C 81.6
(1.2)
P 		42.2
(-1.6)
P 		52.7
(-0.9)
P 		23.3
(-3)
P 		83.2
(1.3)
P 		106.7
(3)
P 		83
avr 48
(-2.2) 		65.7
(-0.5) 		57.3
(-1.4) 		40.1
(-3) 		70.4
(-0.1) 		102.7
(3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176600_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18107
Sequence Type Exemplar sequence
Representative Public ID K10B3.9 NCBI
Target Description K10B3.9 /REP_DB=WormBase Gene ID /WP=CE07372 /GEN=mai-1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076135(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076135 NCBI Caenorhabditis elegans Mitochondrial ATPase Inhibitor family member (mai-1) (mai-1) mRNA, complete cds. 11/11 None
GENEFINDER00000032577 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3114988:3115848:-1 11/11 None
SNAP00000032573 ENSEMBL cdna:SNAP chromosome:CEL140:X:3115293:3115556:-1 9/11 None
K10B3.9.1 ENSEMBL cdna:known chromosome:CEL140:X:3113441:3115580:-1 gene:K10B3.9 11/11 A 
K10B3.9.3 ENSEMBL cdna:known chromosome:CEL140:X:3113441:3115569:-1 gene:K10B3.9 11/11 None
K10B3.9.2 ENSEMBL cdna:known chromosome:CEL140:X:3113441:3116582:-1 gene:K10B3.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3114987-3115556(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mai-1
Ensembl K10B3.9
Entrez Gene 3565232 Entrez gene
SwissProt P37209 EMBL-EBI
WormBase CE07372 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
45978 negative regulation of nucleoside metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5739 mitochondrion inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4857 enzyme inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB53875 Mitochondrial atpase inhibitor family protein 1 [Caenorhabditis elegans] ref|NP_508536.1| Mitochondrial ATPase Inhibitor family member (mai-1) [Caenorhabditis elegans] sp|P37209|ATIF1_CAEEL ATPase inhibitor, mitochondrial homolog gb|AAA28107.1| ATPase inhibitor 7.0E-20
blast AAB53875 Mitochondrial atpase inhibitor family protein 1 [Caenorhabditis elegans] ref|NP_508536.1| Mitochondrial ATPase Inhibitor family member (mai-1) [Caenorhabditis elegans] sp|P37209|ATIF1_CAEEL ATPase inhibitor, mitochondrial homolog gb|AAA28107.1| ATPase inhibitor 9.0E-20
blast CAE68382 Hypothetical protein CBG14138 [Caenorhabditis briggsae] 1.0E-15
blast CAE68382 Hypothetical protein CBG14138 [Caenorhabditis briggsae] 2.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR007648 EMBL-EBI Mitochondrial ATPase inhibitor, IATP 7.3E-34
Pfam IPR007648 EMBL-EBI Mitochondrial ATPase inhibitor, IATP 7.3E-34
Sequence
Target Sequence 
>C. ELEGANS:176600_S_AT
gaagtggaagtggtgctggacatggtggaggctccggcggctcaatccgtgaagcaggtg
gatcactcggcatgatgggcgccaccagagaagaagaatacttccgaagacaacaaaaag
atcagttggacaatctcaagaagaagcttgaagcagatatgacgcaaagccaacaggaaa
ttcgggatcatgaaaaggttctcgaacaacatcagcaacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTGGAAGTGGTGCTGGACATGG 292 333 26 Antisense
TGGTGCTGGACATGGTGGAGGCTCC 238 553 36 Antisense
GCGGCTCAATCCGTGAAGCAGGTGG 563 293 62 Antisense
GAAGCAGGTGGATCACTCGGCATGA 549 341 76 Antisense
AGGTGGATCACTCGGCATGATGGGC 285 57 81 Antisense
CATGATGGGCGCCACCAGAGAAGAA 649 205 96 Antisense
GATCAGTTGGACAATCTCAAGAAGA 178 419 145 Antisense
GAAGCAGATATGACGCAAAGCCAAC 455 341 175 Antisense
AAGCCAACAGGAAATTCGGGATCAT 147 143 192 Antisense
CGGGATCATGAAAAGGTTCTCGAAC 557 243 208 Antisense
GGTTCTCGAACAACATCAGCAACGA 419 507 222 Antisense
Sequence Source Affymetrix Proprietary Database