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[176595_at]

Description Y97E10AR.2 /REP_DB=WormBase Gene ID /WP=CE26318 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 70      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 81      6grp_total > 90      4grp_total > 44      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 138
(0.6)
P 		164.9
(3)
P 		103.7
(-2.5)
P 		97.6
(-3)
P 		67
B 179
(2.6)
P 		185.8
(3)
P 		109.4
(-1.1)
P 		73.9
(-3)
P 		112
C 148.4
(0.9)
P 		157
(3)
P 		132.6
(-3)
P 		145.2
(0.1)
P 		24
avr 155.1
(1.7) 		169.2
(3) 		115.2
(-2.1) 		105.6
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 313
(2)
P 		308.7
(1.9)
P 		224.1
(-1.3)
P 		326.4
(2.6)
P 		337.9
(3)
P 		180.9
(-3)
P 		157
B 289
(0.7)
P 		278.6
(0.4)
P 		230.1
(-1)
P 		366.9
(3)
P 		250.4
(-0.4)
P 		161.7
(-3)
P 		205
C 280.4
(1.3)
P 		276.8
(1.1)
P 		284.7
(1.4)
P 		324.6
(3)
P 		238.7
(-0.4)
P 		172.4
(-3)
P 		152
avr 294.1
(1.4) 		288
(1.2) 		246.3
(-0.3) 		339.3
(3) 		275.7
(0.7) 		171.7
(-3) 		168
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 50.3
(3)
P 		35.8
(0.6)
P 		27.1
(-0.9)
P 		14.3
(-3)
P 		36
B 57.1
(3)
P 		45.9
(1.4)
P 		25.3
(-1.6)
P 		15.7
(-3)
P 		41
C 49.1
(3)
P 		45.1
(2)
P 		46.2
(2.3)
P 		24.5
(-3)
P 		25
avr 52.2
(3) 		42.3
(1.3) 		32.9
(-0.4) 		18.2
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 57.7
(-1.8)
P 		109.8
(3)
P 		48.8
(-2.6)
P 		82.8
(0.5)
P 		102
(2.3)
P 		44
(-3)
P 		66
B 100.6
(2.9)
P 		92.7
(1.8)
P 		55.9
(-3)
P 		97.2
(2.4)
P 		101.7
(3)
P 		60.3
(-2.4)
P 		46
C 103.9
(3)
P 		84.5
(0.5)
P 		72.5
(-1.1)
P 		65.3
(-2)
P 		77.2
(-0.5)
P 		57.7
(-3)
P 		46
avr 87.4
(1.8) 		95.7
(3) 		59.1
(-2.3) 		81.8
(1) 		93.6
(2.7) 		54
(-3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176595_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11981
Sequence Type Exemplar sequence
Representative Public ID Y97E10AR.2 NCBI
Target Description Y97E10AR.2 /REP_DB=WormBase Gene ID /WP=CE26318 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029123
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000015067 ENSEMBL cdna:SNAP chromosome:CEL140:V:7998792:8002712:1 10/11 None
GENEFINDER00000015076 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7998792:8002712:1 11/11 None
Y97E10AR.2a ENSEMBL cdna:known chromosome:CEL140:V:7998769:8002812:1 gene:Y97E10AR.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029122 1/11 Cross Hyb Matching Probes None
NM_001029123 6/11 Cross Hyb Matching Probes None
Y97E10AR.2b 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7998792-8002713(+) 97.78 100.0
Public Domain and Genome References
Ensembl Y97E10AR.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60914 Hypothetical protein Y97E10AR.2a [Caenorhabditis elegans] ref|NP_001024293.1| Y97E10AR.2a [Caenorhabditis elegans] 0.0
blast CAE66165 Hypothetical protein CBG11402 [Caenorhabditis briggsae] 0.0
blast AAR12985 Hypothetical protein Y97E10AR.2b [Caenorhabditis elegans] ref|NP_001024294.1| Y97E10AR.2b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 1.0E-39
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 1.0E-39
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 9.7E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
Y97E10AR.2a 1 21-43
SNAP00000015067 1 21-43
GENEFINDER00000015076 1 31-53
Sequence
Target Sequence 
>C. ELEGANS:176595_AT
gttctccagggtccagagttcagacgaagaagggaactcttttatccaaaacctcgagaa
aaataattgctcttctattcgtaagcgttcaaataatttcatatggggatcagttcgacg
tagttctgtattgggatttgtctggaacaacgctatgagctcatttgatgttttttgtaa
acacgatacaaactgtgttcgtggcggtaaacgaccaagtgtgaccaatggatttcccac
tattcttttggattccaataaatatcctcaacttttaatatcaccaactgcaaactctct
ggaaaccactgcagccctggtaattcaatcgactttgatgaatatgcttccccaactctc
tctggatcatcctcggatataccctcaatcaattgaccaagtattagtagaaactggagt
acctcaagttctttatcgaacactttggacagattttcgggctcaattcactcatccaac
tagtccagtcactcttctttatcgtgacactgaaaattccagagttgaagctctttgtga
ctttcgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTCCAGGGTCCAGAGTTCAGAC 94 443 1956 Antisense
ATTGCTCTTCTATTCGTAAGCGTTC 299 7 2021 Antisense
GACCAATGGATTTCCCACTATTCTT 549 383 2178 Antisense
AATATCACCAACTGCAAACTCTCTG 659 173 2232 Antisense
AAACTCTCTGGAAACCACTGCAGCC 24 129 2247 Antisense
TGCAGCCCTGGTAATTCAATCGACT 692 577 2265 Antisense
GATCATCCTCGGATATACCCTCAAT 600 419 2320 Antisense
GGAGTACCTCAAGTTCTTTATCGAA 179 517 2371 Antisense
GATTTTCGGGCTCAATTCACTCATC 602 429 2407 Antisense
TTCACTCATCCAACTAGTCCAGTCA 594 685 2422 Antisense
TTGAAGCTCTTTGTGACTTTCGACA 76 705 2480 Antisense
Sequence Source Affymetrix Proprietary Database