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[176593_at]

Description Y97E10AR.7 /REP_DB=WormBase Gene ID /WP=CE25642 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 74      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_highest_nonorm > 66      6grp_total > 65      4grp_total > 24      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 679
1 2 3 4 range
A 1397.5
(-3)
P 		1582.2
(0.6)
P 		1565.9
(0.3)
P 		1702.5
(3)
P 		305
B 1190.7
(-3)
P 		1412.1
(-0.3)
P 		1688.5
(3)
P 		1612.1
(2.1)
P 		498
C 1274
(-3)
P 		1582.3
(0.1)
P 		1536.4
(-0.4)
P 		1869.9
(3)
P 		596
avr 1287.4
(-3) 		1525.5
(0.2) 		1596.9
(1.2) 		1728.2
(3) 		441

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 574
1 2 3 4 5 6 range
A 1235.4
(-3)
P 		1240
(-3)
P 		1809.6
(3)
P 		1607.4
(0.9)
P 		1329.7
(-2)
P 		1606.3
(0.9)
P 		574
B 1625.9
(2)
P 		1278.4
(-3)
P 		1568.8
(1.1)
P 		1340.1
(-2.1)
P 		1478.1
(-0.1)
P 		1698.6
(3)
P 		420
C 1481.1
(-0.7)
P 		1521.4
(0.3)
P 		1394.5
(-3)
P 		1622.2
(3)
P 		1494.9
(-0.4)
P 		1617.3
(2.9)
P 		228
avr 1447.5
(-0.9) 		1346.6
(-3) 		1591
(2) 		1523.2
(0.6) 		1434.2
(-1.2) 		1640.7
(3) 		294
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 286
1 2 3 4 range
A 508.8
(3)
P 		343.5
(-0.8)
P 		409.4
(0.7)
P 		249.2
(-3)
P 		260
B 379.7
(1.5)
P 		348.8
(-2.3)
P 		391.3
(3)
P 		343.5
(-3)
P 		48
C 421.7
(-0.1)
P 		454.9
(0.8)
P 		535.5
(3)
P 		315.3
(-3)
P 		220
avr 436.7
(2.6) 		382.4
(0.4) 		445.4
(3) 		302.7
(-3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 406
1 2 3 4 5 6 range
A 227.7
(-3)
P 		441
(3)
P 		394.1
(1.7)
P 		407.7
(2.1)
P 		401.2
(1.9)
P 		391.1
(1.6)
P 		213
B 565.7
(1.5)
P 		425.5
(-1.5)
P 		380.9
(-2.4)
P 		354.9
(-3)
P 		600.5
(2.3)
P 		633.4
(3)
P 		279
C 549
(3)
P 		464.2
(0.7)
P 		354.9
(-2.2)
P 		326.2
(-3)
P 		483.7
(1.2)
P 		541.4
(2.8)
P 		223
avr 447.5
(0.2) 		443.6
(0) 		376.6
(-2.5) 		362.9
(-3) 		495.1
(2) 		522
(3) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176593_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12464
Sequence Type Exemplar sequence
Representative Public ID Y97E10AR.7 NCBI
Target Description Y97E10AR.7 /REP_DB=WormBase Gene ID /WP=CE25642 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072660(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072660 NCBI Caenorhabditis elegans Y97E10AR.7 (Y97E10AR.7) mRNA, complete cds. 11/11 None
SNAP00000015072 ENSEMBL cdna:SNAP chromosome:CEL140:V:8013215:8013697:-1 11/11 None
GENEFINDER00000015079 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8013215:8013697:-1 11/11 None
Y97E10AR.7.1 ENSEMBL cdna:known chromosome:CEL140:V:8013062:8013697:-1 gene:Y97E10AR.7 11/11 None
Y97E10AR.7.2 ENSEMBL cdna:known chromosome:CEL140:V:8013130:8013699:-1 gene:Y97E10AR.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8013215-8013698(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y97E10AR.7
Entrez Gene 179177 Entrez gene
SwissProt Q9N2U6 EMBL-EBI
WormBase CE25642 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60911 Hypothetical protein Y97E10AR.7 [Caenorhabditis elegans] ref|NP_505061.1| Y97E10AR.7 [Caenorhabditis elegans] sp|Q9N2U6|LM1P_CAEEL Late endosomal/lysosomal Mp1 interacting protein homolog 6.0E-62
blast CAE66161 Hypothetical protein CBG11395 [Caenorhabditis briggsae] 8.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR004942 EMBL-EBI Roadblock/LC7 family 1.2E-14
Sequence
Target Sequence 
>C. ELEGANS:176593_AT
aaagcgctggttgatgttctcggacaggtgaacacaagcggtgttgatggttcgtggctt
ttcaataaggaaggattgctccttgcctacgtcggaagcgaacagaaagccgttgcatca
aacgtctcatctgcacttatagccagtgtctgggctgctctcgagagaagagccaacgat
ctgaaagaaactattctcgttctggagaatggagtaattggttgcacactcgtcgctcgt
acaatgcttctggcagtcaaggccgacaagagtgccgatttgggaatggtccgcgctaag
cttcatacactggccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCGCTGGTTGATGTTCTCGGAC 274 125 25 Antisense
AAGGAAGGATTGCTCCTTGCCTACG 54 151 91 Antisense
TCCTTGCCTACGTCGGAAGCGAACA 379 591 104 Antisense
GAAAGCCGTTGCATCAAACGTCTCA 393 359 129 Antisense
AAACGTCTCATCTGCACTTATAGCC 436 127 144 Antisense
TATAGCCAGTGTCTGGGCTGCTCTC 286 659 162 Antisense
GAGTAATTGGTTGCACACTCGTCGC 113 399 236 Antisense
TCGCTCGTACAATGCTTCTGGCAGT 156 599 257 Antisense
GGCCGACAAGAGTGCCGATTTGGGA 519 539 285 Antisense
GATTTGGGAATGGTCCGCGCTAAGC 644 425 301 Antisense
GCGCTAAGCTTCATACACTGGCCGC 478 285 317 Antisense
Sequence Source Affymetrix Proprietary Database