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Cluster Members
Consensus/Exemplar

GeneChip Array Information

Probe Set ID

176592_at

GeneChip Array

C. elegans Genome Array

Organism Common Name

Nematode

Probe Design Information

Transcript ID(Array Design)

affy.Ce.11737

Sequence Type

Exemplar sequence

Representative Public ID

Y97E10AL.2 NCBI

Target Description

Y97E10AL.2 /REP_DB=WormBase Gene ID /WP=CE26316 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation

Annotation Method Description

Annotation Description

This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).

Annotation Grade

This is a grade A annotation.

Annotation Transcript Cluster (# of Matching Probes)

NM_072653(11)

Transcript Assignments

Representative Transcript	Description	Matching Probes	Related Probesets by Grade
NM_072653 NCBI	Caenorhabditis elegans Y97E10AL.2 (Y97E10AL.2) mRNA, complete cds.	11/11	None
SNAP00000037205 ENSEMBL	cdna:SNAP chromosome:CEL140:V:7986734:7988498:1	11/11	None
GENEFINDER00000037207 ENSEMBL	cdna:GeneFinder chromosome:CEL140:V:7987176:7988498:1	11/11	None
Y97E10AL.2.1 ENSEMBL	cdna:known chromosome:CEL140:V:7986467:7988498:1 gene:Y97E10AL.2	11/11	None
Y97E10AL.2.2 ENSEMBL	cdna:known chromosome:CEL140:V:7986684:7988498:1 gene:Y97E10AL.2	11/11	None

Annotation Notes

There are no noteworthy cross hybridizing mRNAs found for this probe set.

Genomic Alignment of Consensus/Exemplar Sequence

Assembly

Wormbase March 2004

Alignment(s)

Position	Identity	Coverage	Cytoband
chrV:7986734-7988499(+)	100.0	100.0

Public Domain and Genome References

Gene Title

Ensembl

Y97E10AL.2

Entrez Gene

179172 Entrez gene

SwissProt

Q965S2 EMBL-EBI

WormBase

CE26316 Wormbase

Functional Annotations

Ortholog

ID	Title	Organism
CANINE:1583363_AT	similar to Protein C20orf22	cfa
CANINE_2:CFA.3222.1.A1_AT	similar to Protein C20orf22	cfa
CANINE_2:CFAAFFX.7518.1.S1_AT	similar to Protein C20orf22	cfa
DROSOPHILA_2:1625568_A_AT		dm
DROSGENOME1:147479_AT		dm
CHICKEN:GGAAFFX.12857.1.S1_S_AT	similar to Protein C20orf22	gga
CHICKEN:GGAAFFX.21365.1.S1_S_AT	similar to Protein C20orf22	gga
HG-U133_PLUS_2:228124_AT	chromosome 20 open reading frame 22	hs
HG-U133B:228124_AT	chromosome 20 open reading frame 22	hs
HU35KSUBA:RC_AA429472_AT	chromosome 20 open reading frame 22	hs
HU35KSUBD:RC_N34825_S_AT	chromosome 20 open reading frame 22	hs
U133_X3P:HS.236522.1.S1_3P_AT	chromosome 20 open reading frame 22	hs
U133_X3P:HS.236522.0.S1_3P_X_AT	chromosome 20 open reading frame 22	hs
U133_X3P:HS.236522.0.S1_3P_AT	chromosome 20 open reading frame 22	hs
HG-U133_PLUS_2:224742_AT	chromosome 20 open reading frame 22	hs
HG-U133B:224742_AT	chromosome 20 open reading frame 22	hs
HG-U133_PLUS_2:228123_S_AT	chromosome 20 open reading frame 22	hs
HG-U133B:228123_S_AT	chromosome 20 open reading frame 22	hs
HG-U95C:49047_R_AT	chromosome 20 open reading frame 22	hs
HG-U95C:59723_S_AT	chromosome 20 open reading frame 22	hs
HG-U95D:84848_AT	Chromosome 20 open reading frame 22	hs
MG-U74BV2:106237_AT	RIKEN cDNA 6330583M11 gene	mm
MOE430A:1453367_A_AT	RIKEN cDNA 6330583M11 gene	mm
MOUSE430A_2:1453367_A_AT	RIKEN cDNA 6330583M11 gene	mm
MOUSE430_2:1453367_A_AT	RIKEN cDNA 6330583M11 gene	mm
MOE430A:1417669_AT	RIKEN cDNA 6330583M11 gene	mm
MOUSE430A_2:1417669_AT	RIKEN cDNA 6330583M11 gene	mm
MOUSE430_2:1417669_AT	RIKEN cDNA 6330583M11 gene	mm
MU19KSUBB:TC27702_AT	RIKEN cDNA 6330583M11 gene (6330583M11Rik), mRNA	mm
RG-U34B:RC_AA924737_AT	similar to Protein C20orf22 homolog	rn
RAE230A:1389594_AT	similar to Protein C20orf22 homolog	rn
RAT230_2:1389594_AT	similar to Protein C20orf22 homolog	rn

Protein Similarities

Method	ID	Description	E-Value
blast	AAK85512	Hypothetical protein Y97E10AL.2 [Caenorhabditis elegans] ref\|NP_505054.1\| Y97E10AL.2 [Caenorhabditis elegans]	0.0
blast	CAE64017	Hypothetical protein CBG08612 [Caenorhabditis briggsae]	1.0E-180
blast	AAK85512	Hypothetical protein Y97E10AL.2 [Caenorhabditis elegans] ref\|NP_505054.1\| Y97E10AL.2 [Caenorhabditis elegans]	1.0E-140
blast	CAE64017	Hypothetical protein CBG08612 [Caenorhabditis briggsae]	1.0E-122

Protein Domains

Trans Membrane
ID	Number Of Domains	Domain Boundaries
NP_505054.1	1	12-34
Y97E10AL.2.1	1	12-34
Y97E10AL.2.2	1	12-34
SNAP00000037205	1	12-34

Sequence

Target Sequence

>C. ELEGANS:176592_AT
tcatgtcgtctgtttcgattatcgaggatatggagattcagaaggaacaccaaccgaaaa
aggaattgttgaagatacaaaaacagtatacgaatggctgaaggagaattgcgggaagac
gcctgttattgtatggggtcattcgatgggaactggtgtctcctgcaagttggtgcaaga
tctttcaagagaacagcaaccaccgtgcggtttaatcctcgaatcgccattcaacaattt
gaaggatgccgtaacaaatcatccgatcttcacagtgtttagctggatgaatgacttcat
ggtagatcacatcatcattcgaccgctcaacagtgtcggcctcactatgcgttctgacaa
acgcatcagattagtatcgtgtccaataatcatcctccacgccgaggacgacaaaattct
tcctgtgaagctgggaagagcgttgtacgaagcggcaaaagatgccgagagggatatcaa
aattcgagagttttcatcagattatggtcttggtcataaattcatttgtcgatatcctga
gcttcccgaaattat

BLASTn GenBank NR

Probe Info

Probe Sequence(5'-3')	Probe X	Probe Y	Probe Interrogation Position	Strandedness
TCATGTCGTCTGTTTCGATTATCGA	429	621	441	Antisense
GCGGGAAGACGCCTGTTATTGTATG	240	293	551	Antisense
CGATGGGAACTGGTGTCTCCTGCAA	531	249	584	Antisense
CACCGTGCGGTTTAATCCTCGAATC	610	199	641	Antisense
AATCCTCGAATCGCCATTCAACAAT	83	169	654	Antisense
AATCATCCGATCTTCACAGTGTTTA	82	171	697	Antisense
GTAGATCACATCATCATTCGACCGC	353	455	742	Antisense
CATTCGACCGCTCAACAGTGTCGGC	444	217	756	Antisense
GCCTCACTATGCGTTCTGACAAACG	191	283	779	Antisense
GTATCGTGTCCAATAATCATCCTCC	302	455	814	Antisense
GATATCCTGAGCTTCCCGAAATTAT	698	423	971	Antisense

Sequence Source

Affymetrix Proprietary Database

Description	Y97E10AL.2 /REP_DB=WormBase Gene ID /WP=CE26316 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster	6grp_highest_10_10 > 59 6grp_high1_10_10 > 95 4grp_highest_8_8 > 14 4grp_high_8_8 > 22 6grp_highest_nonorm > 69 6grp_total > 85 4grp_total > 16 6grp_highest_sub > In 6grp_high1_sub > In 6grp_rule_based > S6 4grp_rule_based > L4