[Home] | [Total List]

[176591_s_at]

Description Y97E10AR.5 /REP_DB=WormBase Gene ID /WP=CE26319 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 58      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 86      6grp_total > 59      4grp_total > 18      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1233
1 2 3 4 range
A 853.2
(-3)
P 		1172
(-1.2)
P 		1093.6
(-1.6)
P 		1900
(3)
P 		1047
B 1084.8
(-3)
P 		1196
(-2.2)
P 		1089.7
(-3)
P 		1893
(3)
P 		808
C 844
(-3)
P 		1345.9
(-0.6)
P 		958.2
(-2.4)
P 		2076.6
(3)
P 		1233
avr 927.3
(-3) 		1238
(-1.2) 		1047.2
(-2.3) 		1956.5
(3) 		1029

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 606
1 2 3 4 5 6 range
A 1001.5
(3)
P 		744.7
(-2)
P 		971.9
(2.4)
P 		696.2
(-3)
P 		779.9
(-1.4)
P 		918.5
(1.4)
P 		305
B 1023.4
(1.8)
P 		864.9
(-0.3)
P 		870.3
(-0.3)
P 		663.8
(-3)
P 		998.1
(1.4)
P 		1117
(3)
P 		453
C 972.7
(-1.1)
P 		951.2
(-1.4)
P 		835.9
(-3)
P 		894.1
(-2.2)
P 		1003.5
(-0.7)
P 		1269.3
(3)
P 		433
avr 999.2
(1.2) 		853.6
(-1.2) 		892.7
(-0.6) 		751.4
(-3) 		927.2
(0) 		1101.6
(3) 		350
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 310.6
(3)
P 		254.4
(-3)
P 		285.9
(0.4)
P 		278.1
(-0.5)
P 		56
B 345.9
(0.7)
P 		295.4
(-1.3)
P 		252.5
(-3)
P 		403.4
(3)
P 		151
C 279.4
(-3)
P 		387
(3)
P 		334
(0)
P 		350.1
(0.9)
P 		108
avr 312
(-0.6) 		312.3
(-0.6) 		290.8
(-3) 		343.9
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 184.6
(-2.5)
P 		264.9
(3)
P 		211.7
(-0.6)
P 		176.6
(-3)
P 		235.3
(1)
P 		223.6
(0.2)
P 		88
B 356.1
(1.5)
P 		287.9
(-0.2)
P 		211.3
(-2.1)
P 		175.8
(-3)
P 		405.5
(2.7)
P 		416.5
(3)
P 		241
C 360.5
(1.4)
P 		290.2
(-0.3)
P 		212.8
(-2.2)
P 		179.8
(-3)
P 		324.7
(0.5)
P 		424.9
(3)
P 		245
avr 300.4
(1.2) 		281
(0.5) 		211.9
(-1.8) 		177.4
(-3) 		321.8
(1.9) 		355
(3) 		178
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176591_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11320
Sequence Type Exemplar sequence
Representative Public ID Y97E10AR.5 NCBI
Target Description Y97E10AR.5 /REP_DB=WormBase Gene ID /WP=CE26319 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072661(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072661 NCBI Caenorhabditis elegans Y97E10AR.5 (Y97E10AR.5) mRNA, complete cds. 11/11 None
SNAP00000015073 ENSEMBL cdna:SNAP chromosome:CEL140:V:8013947:8014879:-1 11/11 None
GENEFINDER00000015078 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8013947:8014879:-1 11/11 None
Y97E10AR.5 ENSEMBL cdna:known chromosome:CEL140:V:8013804:8014936:-1 gene:Y97E10AR.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8013947-8014937(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y97E10AR.5
Entrez Gene 179178 Entrez gene
SwissProt Q965S0 EMBL-EBI
WormBase CE26319 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257929_AT DNA-directed RNA polymerase II, putative at
CANINE:1587429_S_AT similar to DNA-directed RNA polymerase II 14.5 kDa polypeptide (RPB9) (RPB14.5) cfa
CANINE:1586035_AT similar to DNA-directed RNA polymerase II 14.5 kDa polypeptide (RPB9) (RPB14.5) cfa
CANINE_2:CFA.7680.1.S1_S_AT similar to DNA-directed RNA polymerase II 14.5 kDa polypeptide (RPB9) (RPB14.5) cfa
CANINE_2:CFA.7791.1.A1_AT similar to DNA-directed RNA polymerase II 14.5 kDa polypeptide (RPB9) (RPB14.5) cfa
DROSOPHILA_2:1633743_AT RNA polymerase II 15kD subunit dm
DROSGENOME1:143519_AT RNA polymerase II 15kD subunit dm
CHICKEN:GGA.18905.1.S1_AT polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa gga
CHICKEN:GGA.18905.2.S1_S_AT polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa gga
U133_X3P:HS.181357.3.S1_3P_S_AT polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa hs
U133_X3P:212955_3P_S_AT polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa hs
HG-U133A_2:212955_S_AT polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa hs
HG-FOCUS:212955_S_AT polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa hs
HG-U133_PLUS_2:212955_S_AT polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa hs
HG-U133A:212955_S_AT polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa hs
HG-U95AV2:34828_AT polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa hs
MU11KSUBA:AA221481_F_AT polymerase (RNA) II (DNA directed) polypeptide I mm
MU11KSUBB:MSA.7248.0_S_AT polymerase (RNA) II (DNA directed) polypeptide I mm
MG-U74AV2:96306_AT polymerase (RNA) II (DNA directed) polypeptide I mm
MOE430A:1428494_A_AT polymerase (RNA) II (DNA directed) polypeptide I mm
MOUSE430A_2:1428494_A_AT polymerase (RNA) II (DNA directed) polypeptide I mm
MOUSE430_2:1428494_A_AT polymerase (RNA) II (DNA directed) polypeptide I mm
MU19KSUBB:TC27380_AT Polymerase (RNA) II (DNA directed) polypeptide I, mRNA (cDNA clone MGC:73656 IMAGE:3466417) mm
MU19KSUBB:TC27381_AT Polymerase (RNA) II (DNA directed) polypeptide I, mRNA (cDNA clone MGC:73656 IMAGE:3466417) mm
MU19KSUBB:TC31094_S_AT Polymerase (RNA) II (DNA directed) polypeptide I, mRNA (cDNA clone MGC:73656 IMAGE:3466417) mm
MU19KSUBC:TC39595_F_AT Polymerase (RNA) II (DNA directed) polypeptide I, mRNA (cDNA clone MGC:73656 IMAGE:3466417) mm
RG-U34A:RC_AA799717_AT polymerase (RNA) II (DNA directed) polypeptide I (predicted) rn
RAE230A:1373668_AT polymerase (RNA) II (DNA directed) polypeptide I (predicted) rn
RAT230_2:1373668_AT polymerase (RNA) II (DNA directed) polypeptide I (predicted) rn
RAE230B:1392132_AT polymerase (RNA) II (DNA directed) polypeptide I (predicted) rn
RAT230_2:1392132_AT polymerase (RNA) II (DNA directed) polypeptide I (predicted) rn
RAE230B:1396917_AT Polymerase (RNA) II (DNA directed) polypeptide I (predicted) rn
RAT230_2:1396917_AT Polymerase (RNA) II (DNA directed) polypeptide I (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6350 transcription inferred from electronic annotation QuickGO AmiGO
6354 RNA elongation inferred from electronic annotation QuickGO AmiGO
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3899 DNA-directed RNA polymerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK85514 Hypothetical protein Y97E10AR.5 [Caenorhabditis elegans] ref|NP_505062.1| Y97E10AR.5 [Caenorhabditis elegans] 3.0E-98
blast AAK85514 Hypothetical protein Y97E10AR.5 [Caenorhabditis elegans] ref|NP_505062.1| Y97E10AR.5 [Caenorhabditis elegans] 1.0E-87
blast CAE66160 Hypothetical protein CBG11394 [Caenorhabditis briggsae] 1.0E-66
blast CAE66160 Hypothetical protein CBG11394 [Caenorhabditis briggsae] 3.0E-66
blast XP_396002 PREDICTED: similar to ENSANGP00000019703 [Apis mellifera] 2.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR001529 EMBL-EBI DNA-directed RNA polymerase, M/15 kDa subunit 6.1E-21
Pfam IPR001222 EMBL-EBI Transcription factor TFIIS 6.8E-8
Pfam IPR001529 EMBL-EBI DNA-directed RNA polymerase, M/15 kDa subunit 6.1E-21
Pfam IPR001222 EMBL-EBI Transcription factor TFIIS 6.8E-8
Sequence
Target Sequence 
>C. ELEGANS:176591_S_AT
tcaaaacggtgcatcaccggcgccgagtcaaaacgaaaaacccgggaaaagtgggcctgg
ttttgttggaatcaagttttgcccagaatgcaataatatgctgtacccacgagaggataa
ggaatcacgagttttgatgtattcctgccggaactgtgagcatcgtgaagtcgccgctaa
cccgtgtatctatgtgaataagctcgttcacgaaattgatgagctcactcaaatcgtcgg
agatattattcacgatccaacgctcccgaagactgaagaacatcaatgtccagtctgtgg
caaaagtaaggctgtcttcttccaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAAACGGTGCATCACCGGCGCCG 697 627 108 Antisense
TCACCGGCGCCGAGTCAAAACGAAA 314 621 121 Antisense
AGTGGGCCTGGTTTTGTTGGAATCA 228 59 157 Antisense
AATATGCTGTACCCACGAGAGGATA 116 173 202 Antisense
CGAGTTTTGATGTATTCCTGCCGGA 438 249 235 Antisense
TCCTGCCGGAACTGTGAGCATCGTG 539 593 250 Antisense
CCGCTAACCCGTGTATCTATGTGAA 499 257 281 Antisense
ATATTATTCACGATCCAACGCTCCC 682 17 350 Antisense
TCCAACGCTCCCGAAGACTGAAGAA 658 587 363 Antisense
AGAACATCAATGTCCAGTCTGTGGC 467 73 384 Antisense
AAAGTAAGGCTGTCTTCTTCCAGGC 631 71 410 Antisense
Sequence Source Affymetrix Proprietary Database