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[176589_at]

Description Y97E10AR.6 /REP_DB=WormBase Gene ID /WP=CE27417 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 65      6grp_total > 94      4grp_total > 29      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 500
1 2 3 4 range
A 1145.2
(3)
P 		1017.9
(0.6)
P 		829
(-3)
P 		955.2
(-0.6)
P 		316
B 1208.8
(1.5)
P 		1053.6
(-0.4)
P 		852.6
(-3)
P 		1323.5
(3)
P 		471
C 1329.2
(3)
P 		1198.5
(0.6)
P 		1003.1
(-3)
P 		1226.4
(1.1)
P 		326
avr 1227.7
(3) 		1090
(0.5) 		894.9
(-3) 		1168.4
(1.9) 		333

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 690
1 2 3 4 5 6 range
A 902.3
(-3)
P 		1072.5
(-0.7)
P 		982.3
(-1.9)
P 		1345.6
(3)
P 		1211.6
(1.2)
P 		1118.9
(-0.1)
P 		443
B 988.6
(-2.7)
P 		1130.4
(-1.4)
P 		958.3
(-3)
P 		1103.3
(-1.6)
P 		1592.3
(3)
P 		1264.1
(-0.1)
P 		634
C 1143.1
(-1.6)
P 		1156.6
(-1.5)
P 		1033
(-3)
P 		1283.7
(0.1)
P 		1519.3
(3)
P 		1390.8
(1.4)
P 		486
avr 1011.3
(-2.7) 		1119.8
(-1.3) 		991.2
(-3) 		1244.2
(0.4) 		1441.1
(3) 		1257.9
(0.6) 		450
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 300
1 2 3 4 range
A 417
(3)
P 		221
(-1.2)
P 		216.7
(-1.3)
P 		139.8
(-3)
P 		277
B 385.5
(3)
P 		260.2
(-1)
P 		197.6
(-3)
P 		282
(-0.3)
P 		188
C 440
(3)
P 		344.6
(0.5)
P 		349.6
(0.7)
P 		206.8
(-3)
P 		233
avr 414.2
(3) 		275.3
(-1.1) 		254.6
(-1.7) 		209.5
(-3) 		205

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 481
1 2 3 4 5 6 range
A 166.3
(-3)
P 		381.4
(3)
P 		213.9
(-1.7)
P 		341.3
(1.9)
P 		365.6
(2.6)
P 		272.4
(-0)
P 		215
B 344
(-1.4)
P 		376.3
(-0.9)
P 		232.7
(-3)
P 		292.2
(-2.1)
P 		646.9
(3)
P 		471.4
(0.5)
P 		414
C 423.7
(1.3)
P 		352.9
(-0.6)
P 		262.9
(-2.9)
P 		258.1
(-3)
P 		491.6
(3)
P 		465.6
(2.3)
P 		234
avr 311.3
(-1.3) 		370.2
(0) 		236.5
(-3) 		297.2
(-1.6) 		501.4
(3) 		403.1
(0.8) 		265
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176589_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11444
Sequence Type Exemplar sequence
Representative Public ID Y97E10AR.6 NCBI
Target Description Y97E10AR.6 /REP_DB=WormBase Gene ID /WP=CE27417 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072662(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072662 NCBI Caenorhabditis elegans Y97E10AR.6 (Y97E10AR.6) mRNA, complete cds. 11/11 None
SNAP00000015074 ENSEMBL cdna:SNAP chromosome:CEL140:V:8015232:8016539:-1 11/11 None
GENEFINDER00000015075 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8015232:8016539:-1 11/11 None
Y97E10AR.6 ENSEMBL cdna:known chromosome:CEL140:V:8014994:8016773:-1 gene:Y97E10AR.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8015417-8016774(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y97E10AR.6
Entrez Gene 179179 Entrez gene
SwissProt Q965R9 EMBL-EBI
WormBase CE27417 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85515 Hypothetical protein Y97E10AR.6 [Caenorhabditis elegans] ref|NP_505063.1| Y97E10AR.6 [Caenorhabditis elegans] 1.0E-172
blast AAK85515 Hypothetical protein Y97E10AR.6 [Caenorhabditis elegans] ref|NP_505063.1| Y97E10AR.6 [Caenorhabditis elegans] 1.0E-151
blast CAE66159 Hypothetical protein CBG11393 [Caenorhabditis briggsae] 1.0E-126
blast NP_001012860 BSD domain containing 1 [Gallus gallus] emb|CAG32437.1| hypothetical protein [Gallus gallus] 4.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR005607 EMBL-EBI BSD 3.8E-12
Pfam IPR005607 EMBL-EBI BSD 3.8E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505063.1 1 17-39
Y97E10AR.6 1 17-39
Sequence
Target Sequence 
>C. ELEGANS:176589_AT
aaactggaaagctcgaactctctgagctttggatggatgactaagattgtggatacggtt
acagatacggtcaagaatttggcaatggaagagaccactaccggagaagacgattttact
gaagctatcaagcccaagaaagatagaaaaacttgtttatcaaaattgaagctctccgaa
attcaatccaacgaatctatctatctcactgaaccaggaaattctgaattttatgaaaga
tggatttctcgcttcaatttagacgaatatgacggagagatcaatattcttcttgcaaac
aatccatcattgcgtcaaatgtttgcaaatcttgttccaggcagtgtcaatcatgaaaca
ttctggaaacggtatttctatgctatcgaggttgctgaaatggaggaagaaatgaacaag
tcgacactctccgaggcattgaatgttgatacaaaatcaccaaagaaatcgaaaagaaag
ggatcatctggaacatcatcaaagaaatcatcaccatcatctgaatcgtctgtagtggtt
gtagaagagccaacgagtccgtcacaatctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTGGAAAGCTCGAACTCTCTGA 260 125 652 Antisense
GAACTCTCTGAGCTTTGGATGGATG 100 349 666 Antisense
AAGAGACCACTACCGGAGAAGACGA 7 155 740 Antisense
GAATCTATCTATCTCACTGAACCAG 305 329 844 Antisense
TGGATTTCTCGCTTCAATTTAGACG 649 549 892 Antisense
TATTCTTCTTGCAAACAATCCATCA 90 663 936 Antisense
GCAAATCTTGTTCCAGGCAGTGTCA 17 319 976 Antisense
AACGGTATTTCTATGCTATCGAGGT 381 143 1019 Antisense
ATGAACAAGTCGACACTCTCCGAGG 506 41 1063 Antisense
ACCATCATCTGAATCGTCTGTAGTG 92 83 1164 Antisense
GCCAACGAGTCCGTCACAATCTGAA 536 277 1200 Antisense
Sequence Source Affymetrix Proprietary Database