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[176587_s_at]

Description Y97E10AR.3 /REP_DB=WormBase Gene ID /WP=CE23172 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 99      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 74      6grp_total > 95      4grp_total > 04      6grp_highest_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 275
1 2 3 4 range
A 504.8
(-1.9)
P 		468.6
(-3)
P 		481.5
(-2.6)
P 		673.4
(3)
P 		205
B 589.3
(-0.1)
P 		463.7
(-3)
P 		508.6
(-2)
P 		726.7
(3)
P 		263
C 527.3
(-1.4)
P 		455.3
(-3)
P 		474.7
(-2.6)
P 		730.6
(3)
P 		275
avr 540.5
(-1.1) 		462.5
(-3) 		488.3
(-2.4) 		710.2
(3) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 434
1 2 3 4 5 6 range
A 441.2
(-3)
P 		556.1
(-1.4)
P 		646.3
(-0.2)
P 		689.6
(0.4)
P 		734.4
(1.1)
P 		875.4
(3)
P 		434
B 512.3
(-3)
P 		599.3
(-1.3)
P 		525.1
(-2.8)
P 		597.6
(-1.4)
P 		826
(3)
P 		650.7
(-0.4)
P 		314
C 523.3
(-3)
P 		619
(0.3)
P 		541.3
(-2.4)
P 		695.9
(3)
P 		670.2
(2.1)
P 		675.8
(2.3)
P 		173
avr 492.3
(-3) 		591.5
(-0.6) 		570.9
(-1.1) 		661
(1) 		743.5
(3) 		734
(2.8) 		251
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 183.8
(3)
P 		101.7
(-2.8)
P 		125.9
(-1.1)
P 		98.6
(-3)
P 		85
B 187.9
(3)
P 		114.5
(-3)
P 		117.9
(-2.7)
P 		154.9
(0.3)
P 		73
C 174.5
(3)
P 		130.9
(-2.1)
P 		165.4
(1.9)
P 		123.2
(-3)
P 		51
avr 182.1
(3) 		115.7
(-3) 		136.4
(-1.1) 		125.6
(-2.1) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 254
1 2 3 4 5 6 range
A 81.3
(-3)
P 		197.8
(2)
P 		140.8
(-0.5)
P 		174.9
(1)
P 		221.6
(3)
P 		213.1
(2.6)
P 		140
B 178.3
(-1.5)
P 		199.5
(-0.9)
P 		127.5
(-3)
P 		158.3
(-2.1)
P 		335.6
(3)
P 		242.6
(0.3)
P 		208
C 194
(0.8)
P 		188.9
(0.5)
P 		137.8
(-3)
P 		139.9
(-2.9)
P 		216.9
(2.4)
P 		226.2
(3)
P 		88
avr 151.2
(-2.2) 		195.4
(-0.1) 		135.4
(-3) 		157.7
(-1.9) 		258
(3) 		227.3
(1.5) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176587_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12222
Sequence Type Exemplar sequence
Representative Public ID Y97E10AR.3 NCBI
Target Description Y97E10AR.3 /REP_DB=WormBase Gene ID /WP=CE23172 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072658(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072658 NCBI Caenorhabditis elegans Y97E10AR.3 (Y97E10AR.3) mRNA, complete cds. 11/11 None
SNAP00000015070 ENSEMBL cdna:SNAP chromosome:CEL140:V:8008847:8010075:-1 11/11 None
GENEFINDER00000015082 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8008847:8010075:-1 11/11 None
Y97E10AR.3 ENSEMBL cdna:known chromosome:CEL140:V:8008841:8010075:-1 gene:Y97E10AR.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8008847-8010076(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y97E10AR.3
Entrez Gene 179175 Entrez gene
SwissProt Q9N2U8 EMBL-EBI
WormBase CE23172 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60913 Hypothetical protein Y97E10AR.3 [Caenorhabditis elegans] ref|NP_505059.1| Y97E10AR.3 [Caenorhabditis elegans] 1.0E-157
blast CAE66162 Hypothetical protein CBG11397 [Caenorhabditis briggsae] 7.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 1.2E-23
Sequence
Target Sequence 
>C. ELEGANS:176587_S_AT
gagttctcgtgtattattcgttataaggaacgaagaccaggaggatttgaaatgcggcaa
ttccacaaccgccgaaagcgaacgtcccatcttccaaacgaatgtatgcccgaagccaag
tcaagtagacttgattttgctggactattgttgaatacggaaccacttttattggaagaa
gactttaaacttgaacctctagatgacactgctcaagattctcaagattctcaagttgac
gtggttgacagagaaagtggaagtcaggaatcgataactgatcttctaggatctttgaaa
aataatatgaactctacaatgctggatgtgttggagcacttcaaactaaatgcaaacttc
gaaggtattaattatgcaccccaaaatatcgaacatcctgaaatattgaatgaagcaaat
gaagttagaatgacaacgtttttggagagtcttgactcacttacctcggaaattgcttca
ccggaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTCTCGTGTATTATTCGTTATA 683 397 334 Antisense
GAAATGCGGCAATTCCACAACCGCC 406 361 382 Antisense
TCCACAACCGCCGAAAGCGAACGTC 71 585 395 Antisense
AACGTCCCATCTTCCAAACGAATGT 22 139 414 Antisense
GAATGTATGCCCGAAGCCAAGTCAA 97 333 433 Antisense
GACTTGATTTTGCTGGACTATTGTT 406 371 461 Antisense
CTTGAACCTCTAGATGACACTGCTC 149 219 523 Antisense
GACACTGCTCAAGATTCTCAAGATT 580 367 538 Antisense
GCACCCCAAAATATCGAACATCCTG 17 315 709 Antisense
TCTTGACTCACTTACCTCGGAAATT 183 617 783 Antisense
ACCTCGGAAATTGCTTCACCGGAAT 480 69 796 Antisense
Sequence Source Affymetrix Proprietary Database