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[176584_at]

Description Y110A2AM.1 /REP_DB=WormBase Gene ID /WP=CE26042 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 5.5
(-3)
A 		11.1
(-1.4)
A 		12.2
(-1.1)
A 		27.1
(3)
A 		22
B 11.3
(1.6)
A 		5.8
(-3)
A 		8.8
(-0.5)
A 		12.9
(3)
A 		7
C 6.5
(-3)
A 		13.7
(-2.5)
A 		8.3
(-2.9)
A 		100.1
(3)
A 		94
avr 7.8
(-3) 		10.2
(-2.6) 		9.8
(-2.7) 		46.7
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 5.1
(-2.9)
A 		7.4
(-2.5)
A 		4.6
(-3)
A 		38.8
(3)
A 		15
(-1.2)
A 		18.6
(-0.5)
A 		34
B 6.5
(2.2)
A 		4.6
(-3)
A 		6.8
(3)
A 		5.4
(-0.8)
A 		5.8
(0.3)
A 		6
(0.8)
A 		2
C 3.6
(-2.9)
A 		7.7
(-1.1)
A 		7.1
(-1.4)
A 		17
(3)
A 		3.4
(-3)
A 		6.4
(-1.7)
A 		14
avr 5.1
(-3) 		6.6
(-2.4) 		6.2
(-2.6) 		20.4
(3) 		8.1
(-1.8) 		10.3
(-1) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2
(-3)
A 		2.4
(-1.8)
A 		3.2
(0.6)
A 		4
(3)
A 		2
B 3.6
(3)
A 		1.4
(-3)
A 		2
(-1.4)
A 		2.7
(0.5)
A 		2
C 2.2
(-3)
A 		4
(-2.3)
A 		2.9
(-2.7)
A 		16.9
(3)
A 		15
avr 2.6
(-3) 		2.6
(-3) 		2.7
(-2.9) 		7.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.9
(-3)
A 		2.6
(-1.9)
A 		1
(-2.9)
A 		9.8
(3)
A 		4.5
(-0.6)
A 		4.5
(-0.6)
A 		9
B 2.3
(2.4)
A 		1.5
(-2.4)
A 		1.6
(-1.8)
A 		1.4
(-3)
A 		2.4
(3)
A 		2.3
(2.4)
A 		1
C 1.3
(-2.5)
A 		2.4
(0.4)
A 		1.8
(-1.2)
A 		3.4
(3)
A 		1.1
(-3)
A 		2.2
(-0.1)
A 		2
avr 1.5
(-3) 		2.2
(-1.8) 		1.5
(-3) 		4.9
(3) 		2.7
(-0.9) 		3
(-0.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176584_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5532
Sequence Type Exemplar sequence
Representative Public ID Y110A2AM.1 NCBI
Target Description Y110A2AM.1 /REP_DB=WormBase Gene ID /WP=CE26042 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061995(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061995 NCBI Caenorhabditis elegans Y110A2AM.1 (Y110A2AM.1) mRNA, complete cds. 11/11 None
SNAP00000021046 ENSEMBL cdna:SNAP chromosome:CEL140:II:2895594:2905822:-1 11/11 None
Y110A2AM.1 ENSEMBL cdna:known chromosome:CEL140:II:2902959:2903998:-1 gene:Y110A2AM.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2901932-2905974(-) 94.47 100.0
Public Domain and Genome References
Gene Title
Ensembl Y110A2AM.1
Entrez Gene 190944 Entrez gene
SwissProt Q965Y4 EMBL-EBI
WormBase CE33474 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85498 Hypothetical protein Y110A2AM.1 [Caenorhabditis elegans] ref|NP_494396.2| Y110A2AM.1 [Caenorhabditis elegans] 2.0E-96
blast AAK85498 Hypothetical protein Y110A2AM.1 [Caenorhabditis elegans] ref|NP_494396.2| Y110A2AM.1 [Caenorhabditis elegans] 9.0E-61
blast CAE72447 Hypothetical protein CBG19617 [Caenorhabditis briggsae] 4.0E-57
blast AAO21404 Ubiquitin conjugating enzyme protein 26 [Caenorhabditis elegans] ref|NP_871922.1| UBiquitin Conjugating enzyme family member (ubc-26) [Caenorhabditis elegans] 2.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR000608 EMBL-EBI Ubiquitin-conjugating enzymes 9.4E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000021046 1 498-520
Sequence
Target Sequence 
>C. ELEGANS:176584_AT
gagctcatgctcgccgagctgatgctcgagatgctcgtttggaagccgccgccgccgctg
atcgtcgagaacgttttctacaagaagcacaagaagctgatgctcgccgagctgctgatg
gtgatgctcgagctgagctcggcgagcagctacgtgctcttgaagcggccgtcgctggcc
ttccagaagctcaagcaccacaacttcgtgatcgacgtgctcgatttgttgctcgccttc
gtgctcgccgagctgctgatgctcaagctggtgctctcgccaatgagcaacgtgctcttg
aagctcgtttagaaggcgatttcgctgatcttcgagcagctgaaggacgtcttctacatc
cacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTCATGCTCGCCGAGCTGATGC 112 389 920 Antisense
TCGAGATGCTCGTTTGGAAGCCGCC 399 603 945 Antisense
CGCCGCTGATCGTCGAGAACGTTTT 111 257 972 Antisense
GCTGCTGATGGTGATGCTCGAGCTG 342 297 1030 Antisense
TCGGCGAGCAGCTACGTGCTCTTGA 552 607 1058 Antisense
AGAAGCTCAAGCACCACAACTTCGT 163 73 1104 Antisense
ACAACTTCGTGATCGACGTGCTCGA 62 113 1119 Antisense
GCTGGTGCTCTCGCCAATGAGCAAC 180 295 1186 Antisense
GAGCAACGTGCTCTTGAAGCTCGTT 195 391 1204 Antisense
GCGATTTCGCTGATCTTCGAGCAGC 405 289 1235 Antisense
CTGAAGGACGTCTTCTACATCCACC 150 237 1259 Antisense
Sequence Source Affymetrix Proprietary Database