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[176583_at]

Description Y97E10AL.1 /REP_DB=WormBase Gene ID /WP=CE26315 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 328
1 2 3 4 range
A 110.6
(-1.1)
P 		39.3
(-2.4)
A 		7.3
(-3)
A 		335.7
(3)
P 		328
B 84.3
(0.3)
A 		43.1
(-1.5)
A 		8
(-3)
A 		147.1
(3)
P 		139
C 127.5
(0.5)
P 		40.7
(-3)
A 		44.4
(-2.9)
A 		189.7
(3)
P 		149
avr 107.5
(-0.4) 		41
(-2.4) 		19.9
(-3) 		224.2
(3) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 46
(0.3)
A 		64.5
(1.8)
A 		78.7
(3)
A 		71.9
(2.4)
A 		64.5
(1.8)
A 		6.9
(-3)
A 		72
B 87.3
(3)
A 		60.7
(0.1)
A 		32.3
(-3)
A 		43.5
(-1.8)
A 		47.7
(-1.3)
A 		40
(-2.2)
A 		55
C 83.6
(2.4)
P 		90.8
(3)
P 		53.6
(-0.3)
A 		24.6
(-2.8)
A 		32.9
(-2.1)
A 		22.5
(-3)
A 		68
avr 72.3
(3) 		72
(3) 		54.9
(0.9) 		46.7
(-0.1) 		48.4
(0.1) 		23.1
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 40.3
(1.9)
P 		8.5
(-2.2)
A 		1.9
(-3)
A 		49.1
(3)
P 		47
B 26.9
(2.1)
A 		10.6
(-1.2)
A 		1.9
(-3)
A 		31.3
(3)
P 		29
C 42.2
(3)
P 		11.7
(-3)
A 		15.5
(-2.3)
A 		32
(1)
P 		31
avr 36.5
(2.8) 		10.3
(-2.2) 		6.4
(-3) 		37.5
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 8.5
(-1.1)
A 		23
(3)
A 		17.1
(1.3)
A 		18.2
(1.6)
A 		19.4
(2)
A 		1.7
(-3)
A 		21
B 30.4
(3)
A 		20.2
(0.3)
A 		7.8
(-3)
A 		11.5
(-2)
A 		19.4
(0.1)
A 		14.9
(-1.1)
A 		23
C 31
(3)
P 		27.7
(2.2)
P 		13.6
(-1)
A 		5
(-3)
A 		10.6
(-1.7)
A 		7.5
(-2.4)
A 		26
avr 23.3
(2.9) 		23.6
(3) 		12.8
(-1.2) 		11.6
(-1.6) 		16.5
(0.3) 		8
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176583_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11858
Sequence Type Exemplar sequence
Representative Public ID Y97E10AL.1 NCBI
Target Description Y97E10AL.1 /REP_DB=WormBase Gene ID /WP=CE26315 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072654(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072654 NCBI Caenorhabditis elegans Y97E10AL.1 (Y97E10AL.1) mRNA, complete cds. 11/11 None
Y97E10AL.1 ENSEMBL cdna:known chromosome:CEL140:V:7989105:7991364:1 gene:Y97E10AL.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037206 4/11 Cross Hyb Matching Probes None
GENEFINDER00000037208 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7989086-7991365(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y97E10AL.1
Entrez Gene 190813 Entrez gene
SwissProt Q965S1 EMBL-EBI
WormBase CE36053 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85511 Hypothetical protein Y97E10AL.1 [Caenorhabditis elegans] ref|NP_505055.3| Y97E10AL.1 [Caenorhabditis elegans] 1.0E-101
blast CAE64016 Hypothetical protein CBG08611 [Caenorhabditis briggsae] 4.0E-65
blast EAA00796 ENSANGP00000017912 [Anopheles gambiae str. PEST] ref|XP_320806.2| ENSANGP00000017912 [Anopheles gambiae str. PEST] 1.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 9.8E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505055.3 2 15-37,58-80
Y97E10AL.1 2 15-37,58-80
Sequence
Target Sequence 
>C. ELEGANS:176583_AT
gaggcaataccatttcttcctgttccagttgcaattacatgcttattattcaatattttc
atacccggttctggtacgatattatccggattctttgcattatgcatgggacagcctcga
attaacttgaaagagggacgaaaacttataactcttgtagttaatttattggttggaata
tcacagttttttacgataacatttctgtttgttggatggttttggtcaattgcgtgggga
ggattgttgattattcattcaatgcaataccgtgaagcacttcaacaacgtcgacaagaa
gctgtagctacagctgccattgaagcacttaccaaagattcaatccttcacagaagagat
gtcaagacacttctatgtctcaggtcaggaaaaaacggacccggccgcttcgcagaacta
attgacattttctctctgttagaaaaccagcaaatgattcaaaaatacatgtacttatta
aactatgttccatttttatctgcatctgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCAATACCATTTCTTCCTGTTC 131 405 307 Antisense
TCAATATTTTCATACCCGGTTCTGG 447 633 356 Antisense
TATCCGGATTCTTTGCATTATGCAT 441 655 389 Antisense
GCATGGGACAGCCTCGAATTAACTT 494 309 410 Antisense
GGTTTTGGTCAATTGCGTGGGGAGG 165 285 524 Antisense
TGAAGCACTTCAACAACGTCGACAA 224 575 579 Antisense
TGTAGCTACAGCTGCCATTGAAGCA 105 561 609 Antisense
GCACTTACCAAAGATTCAATCCTTC 202 307 631 Antisense
GACACTTCTATGTCTCAGGTCAGGA 688 363 672 Antisense
GGCCGCTTCGCAGAACTAATTGACA 234 541 709 Antisense
TGTTCCATTTTTATCTGCATCTGTG 196 563 792 Antisense
Sequence Source Affymetrix Proprietary Database