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[176581_at] Zinc finger, C2H2 type

Description 2L52.1 /REP_DB=WormBase Gene ID /WP=CE20433 /TR=Q9XWB3 /GB=CAA21776.1 /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 11.2
(-3)
A 		59.7
(-0.9)
P 		51
(-1.3)
A 		147.9
(3)
A 		137
B 35.8
(-1.5)
A 		33.5
(-1.9)
A 		27.7
(-3)
A 		59.3
(3)
A 		32
C 74.1
(-1.7)
A 		61.8
(-2.1)
A 		29.9
(-3)
M 		234
(3)
P 		204
avr 40.4
(-2.8) 		51.7
(-2.2) 		36.2
(-3) 		147.1
(3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 50.2
(0.8)
A 		27.9
(-1.3)
A 		73.7
(3)
P 		55.4
(1.3)
P 		46.7
(0.5)
A 		9.4
(-3)
A 		64
B 45.8
(2.4)
A 		47.9
(3)
P 		39.8
(0.6)
A 		28.3
(-2.7)
A 		40.9
(1)
A 		27.4
(-3)
A 		21
C 33.4
(-1.3)
A 		96.5
(3)
P 		7.7
(-3)
A 		49.5
(-0.2)
A 		25.5
(-1.8)
A 		35.5
(-1.1)
A 		89
avr 43.1
(0.4) 		57.4
(3) 		40.4
(-0.1) 		44.4
(0.7) 		37.7
(-0.5) 		24.1
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 4.1
(-3)
A 		13
(0)
P 		13.3
(0.1)
A 		21.7
(3)
A 		18
B 11.4
(1.8)
A 		8.3
(-1.2)
A 		6.4
(-3)
A 		12.6
(3)
A 		6
C 24.5
(-0.1)
A 		17.8
(-1.5)
A 		10.4
(-3)
M 		39.5
(3)
P 		29
avr 13.3
(-1.6) 		13
(-1.8) 		10
(-3) 		24.6
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 9.2
(0)
A 		9.9
(0.3)
A 		16
(3)
P 		14
(2.1)
P 		14.1
(2.2)
A 		2.3
(-3)
A 		14
B 15.9
(2.5)
A 		15.9
(2.5)
P 		9.7
(-1.5)
A 		7.5
(-3)
A 		16.6
(3)
A 		10.2
(-1.2)
A 		9
C 12.4
(-0.7)
A 		29.4
(3)
P 		2
(-3)
A 		10
(-1.2)
A 		8.3
(-1.6)
A 		11.9
(-0.8)
A 		27
avr 12.5
(-0.4) 		18.4
(3) 		9.2
(-2.4) 		10.5
(-1.6) 		13
(-0.1) 		8.1
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176581_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5574
Sequence Type Exemplar sequence
Representative Public ID 2L52.1 NCBI
Target Description 2L52.1 /REP_DB=WormBase Gene ID /WP=CE20433 /TR=Q9XWB3 /GB=CAA21776.1 /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061228(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061228 NCBI Caenorhabditis elegans 2L52.1 (2L52.1) mRNA, complete cds. 11/11 None
2L52.1 ENSEMBL cdna:known chromosome:CEL140:II:1867:4663:1 gene:2L52.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1866-4546(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type
Ensembl 2L52.1
Entrez Gene 181792 Entrez gene
SwissProt Q9XWB3 EMBL-EBI
WormBase CE32090 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21776 Hypothetical protein 2L52.1 [Caenorhabditis elegans] ref|NP_493629.2| 2L52.1 [Caenorhabditis elegans] 0.0
blast CAE62858 Hypothetical protein CBG07041 [Caenorhabditis briggsae] 6.0E-31
Sequence
Target Sequence 
>C. ELEGANS:176581_AT
tttccaacgggatgtgcgagatgcaactatgatagtgacgaatcagaactggaatcagat
gagttttggtcagccacagagatgtcagataatgaagaagtatatgtgaacttccgtgga
atgaactgtatctcaacaggaaagtcggccagtatggtcccgagcaaacgaagaaattgg
ccaaaaagagtgaagaaaaggctatcgacacaaagaaacaatcagaaaactattcgacca
ccagagctgaataaaaataatatagagataaaagatatgaactcaaataaccttgaagaa
cgcaacagagaagaatgcattcagcctgtttctgttgaaaagaacatcctgcattttgaa
aaattcaaatcaaatcaaatttgcattgttcgggaaaacaataaatttagagaaggaacg
agaagacgcagaaagaattctggtgaatcggaagacttgaaaattcatgaaaactttact
gaaaaacgaagacccattcgatcatgcaaacaaaatataagtttctatgaaatggacggg
gatatagaagaatttgaagtgtttttcgatactcccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCAACGGGATGTGCGAGATGCA 263 667 553 Antisense
ATCAGATGAGTTTTGGTCAGCCACA 308 29 606 Antisense
TGGTCAGCCACAGAGATGTCAGATA 352 549 619 Antisense
ACTTCCGTGGAATGAACTGTATCTC 40 99 662 Antisense
GTATCTCAACAGGAAAGTCGGCCAG 31 455 680 Antisense
AAAGTCGGCCAGTATGGTCCCGAGC 616 121 693 Antisense
GCCAGTATGGTCCCGAGCAAACGAA 421 277 700 Antisense
AGAAAACTATTCGACCACCAGAGCT 434 73 776 Antisense
GAATGCATTCAGCCTGTTTCTGTTG 507 331 865 Antisense
GAAGACCCATTCGATCATGCAAACA 625 339 1040 Antisense
TGAAGTGTTTTTCGATACTCCCACA 170 575 1107 Antisense
Sequence Source Affymetrix Proprietary Database